View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_73 (Length: 246)

Name: NF10103_low_73
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_73
NF10103_low_73
[»] chr8 (1 HSPs)
chr8 (18-216)||(42848706-42848903)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 42848903 - 42848706
Alignment:
Q  18 cagcgaacatagtagcgaaggccgttatcgagagtgccgaagtcgacgccgacgggttggtcagagaggagttggttcatgtcggtggaaacaagtttta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42848903 cagcgaacatagtagcgaaggccgttatcgagagtgccgaagtcgacgccgacgggttggtcagagaggagttggttcatgtcggtcgaaacaagtttta 42848804  T
Q  118 atgatcggaagccttgtttccgtgagatcggagctgctgcttctgatggaagtaattccattcttcttcactctcaccagagtccaacacttccccact 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42848803 atgatcggaagccttgtttccgtgagatcggagctgctgcttctgatggaagtaattccattcttcttcactctcaccagagtccaa-acttccccact 42848706  T

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