View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_74 (Length: 245)
Name: NF10103_low_74
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 2480674 - 2480555
Alignment:
| Q |
109 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaat |
208 |
Q |
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| T |
2480674 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcggccatattgatgaatggaaaaaat |
2480575 |
T |
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| Q |
209 |
gccaaaaccaatttccctat |
228 |
Q |
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| T |
2480574 |
gccaaaaccaatttccctat |
2480555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 47101420 - 47101311
Alignment:
| Q |
116 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
215 |
Q |
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| T |
47101420 |
aggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgccaaaa |
47101321 |
T |
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| Q |
216 |
ccaatttccc |
225 |
Q |
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| T |
47101320 |
caaatttccc |
47101311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 2428746 - 2428636
Alignment:
| Q |
116 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
215 |
Q |
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||||| || ||||| ||| |||| |||||||||||||| || | ||||| |||||||||||| |||||||||| | |||| ||||| |||||| |||| |
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| T |
2428746 |
aggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaaatgcaaaaa |
2428647 |
T |
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| Q |
216 |
ccaatttccct |
226 |
Q |
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| T |
2428646 |
caaatttccct |
2428636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 1726243 - 1726313
Alignment:
| Q |
116 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagc |
186 |
Q |
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||||||| ||| ||||| |||| |||||||| |||||||| | |||||| |||||||||||| ||||||| |
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| T |
1726243 |
aggaagacaagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagc |
1726313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 49532564 - 49532676
Alignment:
| Q |
114 |
acaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaa |
213 |
Q |
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|||| ||||||||||| ||| |||| ||||||||||| ||||| || ||||| ||||||||||||||||| || || ||||||||||| ||| ||| || |
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| T |
49532564 |
acagaaagagaagggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatgaatggtcaaagtgcaaa |
49532663 |
T |
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| Q |
214 |
aaccaatttccct |
226 |
Q |
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|| ||||||||| |
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| T |
49532664 |
gactaatttccct |
49532676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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