View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_75 (Length: 244)

Name: NF10103_low_75
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_75
NF10103_low_75
[»] chr8 (1 HSPs)
chr8 (18-225)||(32666648-32666855)
[»] chr3 (5 HSPs)
chr3 (21-121)||(53144574-53144674)
chr3 (174-215)||(53145330-53145371)
chr3 (68-121)||(21811934-21811987)
chr3 (146-215)||(21812436-21812505)
chr3 (68-121)||(37105017-37105070)
[»] chr4 (3 HSPs)
chr4 (21-113)||(55011696-55011788)
chr4 (27-121)||(37275102-37275196)
chr4 (12-60)||(52869446-52869494)
[»] chr5 (4 HSPs)
chr5 (21-113)||(31110494-31110586)
chr5 (13-60)||(39148768-39148815)
chr5 (68-121)||(2458294-2458347)
chr5 (174-215)||(31111244-31111285)
[»] chr1 (4 HSPs)
chr1 (68-121)||(48470943-48470996)
chr1 (174-215)||(48471672-48471713)
chr1 (7-60)||(43368874-43368927)
chr1 (68-101)||(48471790-48471823)
[»] chr2 (1 HSPs)
chr2 (10-60)||(3595243-3595293)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 32666648 - 32666855
Alignment:
Q  18 gtgttcacatgggaaaggggaattcttttccaccatgagaaagnnnnnnnaaaccactggattaaaagggaacattaatcttaccatagactgtctgcac 117  Q
    ||||||| |||||||||||||||  ||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||     
T  32666648 gtgttcatatgggaaaggggaatcgttttccaccatgagaaagtttttttaaaccactagattaaaagggaacattaatcttaccatagactgtctgcat 32666747  T
Q  118 tatannnnnnnctcattgtcttcaacctcaccaatagacccaccatcgccacctcctccaagagccacccctaaacaaatgatttcagcctaaatcttat 217  Q
    ||||       |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32666748 tatatttttttctcattgtcttcaacctcaccaatagacccaccaccaccacctcctccaagagccacccctaaacaaatgatttcagcctaaatcttat 32666847  T
Q  218 atacctgt 225  Q
    || |||||    
T  32666848 atgcctgt 32666855  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 53144574 - 53144674
Alignment:
Q  21 ttcacatgggaaaggggaattcttttccaccatgagaaagnnnnnnnaaaccactggattaaaagggaacattaatcttaccatagactgtctgcactat 120  Q
    ||||||||||||| ||||||| ||||||||||| | ||||       |||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  53144574 ttcacatgggaaatgggaatttttttccaccataaaaaagtttttttaaaccactagattaaaagggaacattaatcttaccatagactgtctacactat 53144673  T
Q  121 a 121  Q
    |    
T  53144674 a 53144674  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 53145371 - 53145330
Alignment:
Q  174 tccaagagccacccctaaacaaatgatttcagcctaaatctt 215  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  53145371 tccaagagccacccctaaaccattgatttcagcctaaatctt 53145330  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 21811934 - 21811987
Alignment:
Q  68 aaaccactggattaaaagggaacattaatcttaccatagactgtctgcactata 121  Q
    |||||| | ||||||||||||||||| ||||||| ||||||||||  |||||||    
T  21811934 aaaccattagattaaaagggaacattgatcttactatagactgtccacactata 21811987  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 21812505 - 21812436
Alignment:
Q  146 caccaatagacccaccatcgccacctcctccaagagccacccctaaacaaatgatttcagcctaaatctt 215  Q
    ||||||||||||||||| |   |||  |||||||| |||||  ||||||| |||||||||||||||||||    
T  21812505 caccaatagacccaccaccaaaaccgactccaagaaccaccattaaacaattgatttcagcctaaatctt 21812436  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 37105070 - 37105017
Alignment:
Q  68 aaaccactggattaaaagggaacattaatcttaccatagactgtctgcactata 121  Q
    |||||| | ||||||||||||||||| ||||||| ||||||||||  |||||||    
T  37105070 aaaccattagattaaaagggaacattgatcttactatagactgtccacactata 37105017  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 55011788 - 55011696
Alignment:
Q  21 ttcacatgggaaaggggaattcttttccaccatgagaaagnnnnnnnaaaccactggattaaaagggaacattaatcttaccatagactgtct 113  Q
    |||||||||||||| |||||||||| |||| |||||||||       |||||||| ||||||||||||||||||||||||| |||||||||||    
T  55011788 ttcacatgggaaagaggaattctttcccactatgagaaagtttttttaaaccactagattaaaagggaacattaatcttactatagactgtct 55011696  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 37275102 - 37275196
Alignment:
Q  27 tgggaaaggggaattcttttccaccatgagaaagnnnnnnnaaaccactggattaaaagggaacattaatcttaccatagactgtctgcactata 121  Q
    ||||||||| || |||||| ||||||||||||||       |||||| | ||||||||||||||||| ||||||| ||||||||||  |||||||    
T  37275102 tgggaaaggagacttctttcccaccatgagaaagtttttttaaaccattagattaaaagggaacattgatcttactatagactgtccacactata 37275196  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 52869446 - 52869494
Alignment:
Q  12 tggtgcgtgttcacatgggaaaggggaattcttttccaccatgagaaag 60  Q
    ||||| |||||||||||||||||| |||| |||| |||||||| |||||    
T  52869446 tggtgtgtgttcacatgggaaaggtgaatcctttcccaccatgggaaag 52869494  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 31110494 - 31110586
Alignment:
Q  21 ttcacatgggaaaggggaattcttttccaccatgagaaagnnnnnnnaaaccactggattaaaagggaacattaatcttaccatagactgtct 113  Q
    ||||||||| ||||||||||  ||||  || |||||||||       |||||||| |||||||||||||||||||||||||||||||||||||    
T  31110494 ttcacatggaaaaggggaatcattttttactatgagaaagtttttttaaaccactagattaaaagggaacattaatcttaccatagactgtct 31110586  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 39148768 - 39148815
Alignment:
Q  13 ggtgcgtgttcacatgggaaaggggaattcttttccaccatgagaaag 60  Q
    |||| ||||||| |||||||||| |||||||||||||||||| |||||    
T  39148768 ggtgtgtgttcatatgggaaaggtgaattcttttccaccatgggaaag 39148815  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 2458347 - 2458294
Alignment:
Q  68 aaaccactggattaaaagggaacattaatcttaccatagactgtctgcactata 121  Q
    |||||| | ||||||||||||||||| ||||||| ||||||||||  |||||||    
T  2458347 aaaccattagattaaaagggaacattgatcttactatagactgtccacactata 2458294  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 31111285 - 31111244
Alignment:
Q  174 tccaagagccacccctaaacaaatgatttcagcctaaatctt 215  Q
    ||||||| |||||||||||| | |||||||||||||||||||    
T  31111285 tccaagaaccacccctaaaccattgatttcagcctaaatctt 31111244  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 48470943 - 48470996
Alignment:
Q  68 aaaccactggattaaaagggaacattaatcttaccatagactgtctgcactata 121  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| |||||||    
T  48470943 aaaccactagattaaaatggaacattaatcttaccatagactgtctacactata 48470996  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 48471713 - 48471672
Alignment:
Q  174 tccaagagccacccctaaacaaatgatttcagcctaaatctt 215  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  48471713 tccaagagccacccctaaaccattgatttcagcctaaatctt 48471672  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 43368927 - 43368874
Alignment:
Q  7 ttttgtggtgcgtgttcacatgggaaaggggaattcttttccaccatgagaaag 60  Q
    |||| ||||| ||||||||||||||||||  |||||||| |||||||| |||||    
T  43368927 ttttttggtgtgtgttcacatgggaaaggttaattctttcccaccatgggaaag 43368874  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 48471823 - 48471790
Alignment:
Q  68 aaaccactggattaaaagggaacattaatcttac 101  Q
    ||||||||||||| ||||||||||||||||||||    
T  48471823 aaaccactggattgaaagggaacattaatcttac 48471790  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 3595243 - 3595293
Alignment:
Q  10 tgtggtgcgtgttcacatgggaaaggggaattcttttccaccatgagaaag 60  Q
    ||||||| ||||||||||||||||||  |||||||| |||||||| |||||    
T  3595243 tgtggtgtgtgttcacatgggaaaggttaattctttcccaccatgggaaag 3595293  T

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