View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_76 (Length: 241)
Name: NF10103_low_76
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_76 |
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| [»] scaffold0598 (1 HSPs) |
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Alignment Details
Target: scaffold0598 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0598
Description:
Target: scaffold0598; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7070 - 7290
Alignment:
| Q |
1 |
cattaatttcagacatcgccaacatcataattacatgaccaccagtcaatattattaattaggaacttgttaaactttggtttagatggcatccacacag |
100 |
Q |
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| T |
7070 |
cattaatttcagacatcgccaacatcataattacttgaccaccagtcaatattattaattaggaacctgttaaact---gtttagatggcatctacacag |
7166 |
T |
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| Q |
101 |
ttcccattatataaaccttaaactcttttcaacttgaaatcaacagagcttgaaaacactctccaactccagtatacattattacatatgccacgtttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
7167 |
ttcccattatataaaccttaaactcttttcaacttgaaatcaacagagcttgaaaacactctccaactccagtatacataattacatatgccacatttaa |
7266 |
T |
|
| Q |
201 |
gattaagaagaagctccatgaaat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7267 |
gattaagaagaagctccatgaaat |
7290 |
T |
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