View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_8 (Length: 464)

Name: NF10103_low_8
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_8
NF10103_low_8
[»] chr3 (16 HSPs)
chr3 (17-453)||(4129672-4130108)
chr3 (26-453)||(4092237-4092664)
chr3 (55-453)||(4060529-4060930)
chr3 (64-453)||(4115016-4115408)
chr3 (55-453)||(4080138-4080538)
chr3 (382-453)||(3885137-3885208)
chr3 (55-150)||(2919554-2919649)
chr3 (17-136)||(11497555-11497674)
chr3 (64-201)||(911641-911778)
chr3 (71-135)||(3913467-3913531)
chr3 (382-454)||(3913778-3913850)
chr3 (85-195)||(3885395-3885505)
chr3 (19-114)||(5051962-5052057)
chr3 (67-142)||(5965838-5965913)
chr3 (88-144)||(7492316-7492372)
chr3 (91-119)||(11491162-11491190)
[»] chr1 (4 HSPs)
chr1 (64-453)||(13933096-13933488)
chr1 (382-453)||(14005488-14005559)
chr1 (17-118)||(17311809-17311910)
chr1 (85-195)||(14005191-14005301)
[»] scaffold0267 (2 HSPs)
scaffold0267 (55-208)||(18665-18818)
scaffold0267 (282-453)||(18366-18537)
[»] chr4 (1 HSPs)
chr4 (17-172)||(5988530-5988685)


Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 4130108 - 4129672
Alignment:
Q  17 aaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4130108 aaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgataatga 4130009  T
Q  117 tcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccataccatatatcatccaatactagcaaatacttttt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4130008 tcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccataccatatatcatccaatactagcaaaaacttttt 4129909  T
Q  217 gtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaatcattagtcgtggttttttcagaagtaacagattcaagaagggttttagtgatagta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4129908 gtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaatcattagtcgtggttttttcagaagtaacagattcaagaagggttttagtgatagta 4129809  T
Q  317 caaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttcc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4129808 caaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacattggaatcattgtaaaggattttagctaatgttgttttcc 4129709  T
Q  417 ctagccctcccatacctacaatggaaatcactcctat 453  Q
    |||||||||||||||||||||||||||||||||||||    
T  4129708 ctagccctcccatacctacaatggaaatcactcctat 4129672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 26 - 453
Target Start/End: Original strand, 4092237 - 4092664
Alignment:
Q  26 caatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactcc 125  Q
    ||||||||  ||||||||||||||| | |||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||    
T  4092237 caatcttcagtttccaaagatcttacatggtgaacataaagaaaggtttgcatgggtagtgcaactctttcatctcgtgttgtgataatgatcttactcc 4092336  T
Q  126 ccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaa 225  Q
    | ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||  |  ||    
T  4092337 ctattgccccaacattaaagatgtcattcatactattccaaccaacatatcttccataccatatatcatccaatactagcaaaaaacttttgttccttaa 4092436  T
Q  226 actttgctgcaattgaacttgcaaaccgttcaaatcattagtcgtggttttttcagaagtaacagattcaagaagggttttagtgatagtacaaacatca 325  Q
    |||||||||||| |  ||||| | |   ||||| |||||||  ||||||||||| ||||| |||||||||||||| |||||||||| |||   ||||| |    
T  4092437 actttgctgcaacttcacttgtagaatattcaattcattagcggtggttttttctgaagttacagattcaagaagagttttagtgacagtgacaacatta 4092536  T
Q  326 aaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctc 425  Q
    | |||||| |||||||||||||| |||||  ||||||||||| ||||||||||    ||||||||||||| ||||||||  |||||||| ||||||||||    
T  4092537 agatctttggagacatgtgcccaccctcttacctcaaatttctgcttcacatcatggtcattgtaaaggagtttagctagcgttgtttttcctagccctc 4092636  T
Q  426 ccatacctacaatggaaatcactcctat 453  Q
    |||| || ||||||||||||||||||||    
T  4092637 ccatccccacaatggaaatcactcctat 4092664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 55 - 453
Target Start/End: Original strand, 4060529 - 4060930
Alignment:
Q  55 gtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattc 154  Q
    |||||| | ||||||||||||||| | |  |||||| ||||||  || |||||||||||||||| |||| ||||||||||||||| ||||||||||  ||    
T  4060529 gtggactggaagaaaggtttgcatggttgctgcaacgctttcaaatcttgttgtgatgatgatcctacttcccatttccccaacactaaagatgtcgatc 4060628  T
Q  155 agattattccaac---caacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaac 251  Q
    | ||||||||| |   |||||||  ||||||||||||| ||||| | ||| |||||| |||||||   ||| |||||||| |||||||| || || | |     
T  4060629 aaattattccagcagtcaacatactttccataccatatgtcatcgagtacaagcaaaaactttttacttcgtaaactttgttgcaattgcacctgtagaa 4060728  T
Q  252 cgttcaaatcattagtcgtggttt-tttcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatc 350  Q
      ||||| |||| ||| ||  ||| |||  ||||| ||||||| ||||| |||||||||||  ||   |||||||||||||||||||| ||||||||| |    
T  4060729 tattcaagtcatcagt-gtcatttctttttgaagtgacagattgaagaatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccacc 4060827  T
Q  351 ctctcgcctcaaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcc 450  Q
    ||||    |||||||||  |||||| ||    ||||||||||||| |||||| | ||||||||| |||||||||||||| || |||||||||||||||||    
T  4060828 ctcttaaatcaaatttctccttcacttcatggtcattgtaaaggagtttagcaagtgttgtttttcctagccctcccatccccacaatggaaatcactcc 4060927  T
Q  451 tat 453  Q
    |||    
T  4060928 tat 4060930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 64 - 453
Target Start/End: Original strand, 4115016 - 4115408
Alignment:
Q  64 aagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattc 163  Q
    |||||| |||||||| | |  ||| |||||||||| || |||||||||||||||| ||||||| |||||||||||| ||||||||||   || |||||||    
T  4115016 aagaaatgtttgcatggttgctgctactctttcatttcttgttgtgatgatgatcctactccctatttccccaacactaaagatgtcggccaaattattc 4115115  T
Q  164 caac---caacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaat 260  Q
    || |   |||||||  ||||||||||||| ||||||| ||| |||||| ||||| | |  |  |||| ||| |||||||  ||||| | |   ||||  |    
T  4115116 cagcagtcaacatagtttccataccatatgtcatccagtacaagcaaaaactttgtattgcttaaacattgttgcaatttcacttgtagaatattcaggt 4115215  T
Q  261 cattagtcgtggttt-tttcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcct 359  Q
    ||| ||| ||  ||| |||  ||||| || |||||||||| |||||||||||   |   |||||||||||| ||||||| ||||||||| |||||  |||    
T  4115216 catcagt-gtcatttctttttgaagtgacggattcaagaatggttttagtgacgatgacaacatcaaaatcctttgagatatgtgcccaccctcttacct 4115314  T
Q  360 caaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 453  Q
    |||||||| ||||||||||    |||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||    
T  4115315 caaatttctgcttcacatcatggtcattgtaaaggattttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat 4115408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 55 - 453
Target Start/End: Original strand, 4080138 - 4080538
Alignment:
Q  55 gtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattc 154  Q
    |||||| | ||||||||||||||| |||  |||||| ||||||  || |||||||||||||||| |||| ||||||||||||||| ||||||||||  ||    
T  4080138 gtggactggaagaaaggtttgcat-ggttgtgcaacgctttcaaatcttgttgtgatgatgatcctacttcccatttccccaacactaaagatgtcgatc 4080236  T
Q  155 agattattccaac---caacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaac 251  Q
    | ||||||||| |   |||||||  ||||||||||||| ||||| | ||  |||||| |||||||   ||  |||||||| |||||||| ||||| | |     
T  4080237 aaattattccagcactcaacatactttccataccatatgtcatcgagtaaaagcaaaaactttttacttcttaaactttgttgcaattgcacttgtagaa 4080336  T
Q  252 cgttcaaatcattagtcgtggttttt-tcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatc 350  Q
      |||||  ||| ||| ||  ||| | |  ||||| ||||||||||| | |||||||||||  ||   |||||||||||||||||||| ||||||||| |    
T  4080337 tattcaaggcatcagt-gtcatttctctttgaagtgacagattcaaggatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccacc 4080435  T
Q  351 ctctcgcctcaaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcc 450  Q
    ||||| |||||||||||  |||||| ||    || ||||| |||| |||||||| ||||||||| |||||||||||||| || |||||||||||||||||    
T  4080436 ctctcacctcaaatttctccttcacttcacggtcgttgtagaggagtttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcc 4080535  T
Q  451 tat 453  Q
    |||    
T  4080536 tat 4080538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 453
Target Start/End: Complemental strand, 3885208 - 3885137
Alignment:
Q  382 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 453  Q
    ||||||| |||||| |||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||    
T  3885208 atcattgaaaaggagtttagctagtgttgtttttccaagccctcccatgcctacaatggaaatcactcctat 3885137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 2919649 - 2919554
Alignment:
Q  55 gtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtc 150  Q
    ||||||| ||| |||||||||||| | || || |||||||||||||||||| |||||||||||| |||| ||  ||||| | ||||||||||||||    
T  2919649 gtggacataaaaaaaggtttgcatggatattggaactctttcatctcgtgtagtgatgatgatcctacttccagtttccaccacattaaagatgtc 2919554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 11497555 - 11497674
Alignment:
Q  17 aaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatga 116  Q
    |||||||||||||||||  |||||| || | | |||  ||||||| ||| |||||||||||| | |  || |||||||||||||||||||||||||||||    
T  11497555 aaagaccaacaatcttcgctttccagaggtttcaaatagtggacataaaaaaaggtttgcatggattttggaactctttcatctcgtgttgtgatgatga 11497654  T
Q  117 tcttactccccatttcccca 136  Q
    || |||| ||| ||| ||||    
T  11497655 tcctacttccctttttccca 11497674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 911641 - 911778
Alignment:
Q  64 aagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattc 163  Q
    ||||||||||||||  | || ||||||||| |||||||||||||||| |||||  ||||| || |||| |||  ||||||||||||| || ||||| |||    
T  911641 aagaaaggtttgcacggctagtgcaactctctcatctcgtgttgtgacgatgagtttacttcctattttcccggcattaaagatgtcctttagattgttc 911740  T
Q  164 caaccaacatatcttccataccatatatcatccaatac 201  Q
    ||| ||| |||   || || |||||| |||||||||||    
T  911741 caatcaatatagtgtcgatcccatatgtcatccaatac 911778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 3913467 - 3913531
Alignment:
Q  71 gtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttcccc 135  Q
    |||||||||| ||||||||| |||||||| ||||||||||||| ||||||||| |||| ||||||    
T  3913467 gtttgcattgctaatgcaacactttcatcccgtgttgtgatgacgatcttacttcccacttcccc 3913531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 454
Target Start/End: Original strand, 3913778 - 3913850
Alignment:
Q  382 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctatg 454  Q
    |||||||||||| | |||||||| ||||||||| || | |||||||||||| ||||| || ||||||||||||    
T  3913778 atcattgtaaagtagtttagctagtgttgtttttccaatccctcccataccaacaatagatatcactcctatg 3913850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 3885505 - 3885395
Alignment:
Q  85 tgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccatac 184  Q
    |||||| |||||||||||||| ||||  |||||  |||| ||| |||| ||| || |||| |||||  | |||||||||||| ||||||| ||||||| |    
T  3885505 tgcaacactttcatctcgtgtcgtgacaatgattctacttcccttttcaccagcactaaaaatgtccattagattattccaatcaacatagcttccatcc 3885406  T
Q  185 catatatcatc 195  Q
    || ||||||||    
T  3885405 caaatatcatc 3885395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 5052057 - 5051962
Alignment:
Q  19 agaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgat 114  Q
    |||||| ||||||||  ||||||||| ||| |||  ||||||| ||| |||| ||| ||| | |  || |||||||||||||||||||||||||||    
T  5052057 agaccagcaatcttcgctttccaaaggtctcaaatagtggacataaaaaaagctttccatggattttggaactctttcatctcgtgttgtgatgat 5051962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 5965913 - 5965838
Alignment:
Q  67 aaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacatta 142  Q
    ||||||||| |||| || ||||||| |||||||  ||||||||||||||||| |||| ||  |||| |||||||||    
T  5965913 aaaggtttgtattgatagtgcaactttttcatcctgtgttgtgatgatgatcctacttcctgtttcaccaacatta 5965838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 7492316 - 7492372
Alignment:
Q  88 aactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaa 144  Q
    |||| |||||||||||||||||||||||||| ||||  || ||| |||| |||||||    
T  7492316 aactttttcatctcgtgttgtgatgatgatcctactttccgttttcccagcattaaa 7492372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 11491162 - 11491190
Alignment:
Q  91 tctttcatctcgtgttgtgatgatgatct 119  Q
    |||||||||||||||||||||||||||||    
T  11491162 tctttcatctcgtgttgtgatgatgatct 11491190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 64 - 453
Target Start/End: Complemental strand, 13933488 - 13933096
Alignment:
Q  64 aagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattc 163  Q
    ||||||||||||||| | |  |||||||||||||| || |||||||||||||| ||||||| || ||  |||||||||||| |||||| ||| | |||||    
T  13933488 aagaaaggtttgcatggttgctgcaactctttcatttcttgttgtgatgatgaccttactctcccttaacccaacattaaatatgtcaatcaaactattc 13933389  T
Q  164 caac---caacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaat 260  Q
    || |   |||||||| |||||| |||||| ||||| | ||| |||||| |||||||   ||  |||||||| |||||||| ||||| |||   |||||      
T  13933388 cagcagtcaacatattttccatgccatatgtcatcgagtacaagcaaaaactttttacttcttaaactttgttgcaattgcacttgtaaaatattcaagg 13933289  T
Q  261 cattagtcgtggttttt-tcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcct 359  Q
    ||| ||| ||  ||| | |  ||||| ||||||||||| | |||||||||||  ||   |||||||||||||||||||| ||||||||| |||||| |||    
T  13933288 catcagt-gtcatttctctttgaagtgacagattcaaggatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccaccctctcacct 13933190  T
Q  360 caaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 453  Q
    ||||||||  |||||| ||    || ||||| |||| |||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||    
T  13933189 caaatttctccttcacttcacggtcgttgtagaggagtttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat 13933096  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 14005488 - 14005559
Alignment:
Q  382 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 453  Q
    ||||||| |||||| |||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||    
T  14005488 atcattgaaaaggagtttagctagtgttgtttttccaagccctcccatgcctacaatggaaatcactcctat 14005559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 17311910 - 17311809
Alignment:
Q  17 aaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatga 116  Q
    |||||||||||||||||  |||| | || ||| |||  ||||||| ||| |||||||||||| | |  || |||||||||||||||||||||||| ||||    
T  17311910 aaagaccaacaatcttcgctttctagaggtctcaaatagtggacataaaaaaaggtttgcatggattttggaactctttcatctcgtgttgtgataatga 17311811  T
Q  117 tc 118  Q
    ||    
T  17311810 tc 17311809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 14005191 - 14005301
Alignment:
Q  85 tgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccatac 184  Q
    |||||| |||||||||||||| ||||  |||||  |||| ||| |||| ||| || |||| |||||  | |||||||||||| ||||||| ||||||| |    
T  14005191 tgcaacactttcatctcgtgtcgtgacaatgattctacttcccttttcaccagcactaaaaatgtccattagattattccaatcaacatagcttccatcc 14005290  T
Q  185 catatatcatc 195  Q
    || ||||||||    
T  14005291 caaatatcatc 14005301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 18818 - 18665
Alignment:
Q  55 gtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattc 154  Q
    ||||| || ||||||||||||| |   || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||     
T  18818 gtggataggaagaaaggtttgcgtgactagtgcaactctttcatctcgtgttgtgatgatgatcttacttcccatttccccaacattaaagatgtctttg 18719  T
Q  155 agattattccaaccaacatatcttccataccatatatcatccaatactagcaaa 208  Q
    ||||| |||||| | ||||| ||||||| ||| || ||||||| ||||||||||    
T  18718 agattgttccaatccacataacttccatcccacatgtcatccagtactagcaaa 18665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 453
Target Start/End: Complemental strand, 18537 - 18366
Alignment:
Q  282 aagtaacagattcaagaagggttttagtgata-gtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgg 380  Q
    ||||||||||||||||||||||||||||||   | ||||  ||||||||||||||||| || |||||| ||| ||   |||||||||  ||| || || |    
T  18537 aagtaacagattcaagaagggttttagtgacccggacaat-atcaaaatcttttgagatatatgcccaccctttcaaatcaaatttctcctttacttccg 18439  T
Q  381 aatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 453  Q
     ||| |||||||| | |||||| |  |||||||| || |  |||||||| || ||||||||||||||||||||    
T  18438 gatcgttgtaaagaagtttagcaagagttgttttacccaagcctcccattcccacaatggaaatcactcctat 18366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 5988685 - 5988530
Alignment:
Q  17 aaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatga 116  Q
    |||||||||||||||||  |||||| || ||| |||  ||||||||| |||||| ||||||| | |  ||||||||||||||| | ||||||||||||||    
T  5988685 aaagaccaacaatcttcactttccagaggtctcaaatagtggacagagagaaagatttgcatggatcttgcaactctttcatcccttgttgtgatgatga 5988586  T
Q  117 tcttactccccatttccccaacattaaagatgtcattcagattattccaaccaaca 172  Q
    || |||| |||||||  ||| ||||||||| |||  |||||| | ||||| |||||    
T  5988585 tcctacttcccattttaccagcattaaagacgtccatcagataaatccaatcaaca 5988530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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