View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_83 (Length: 240)
Name: NF10103_low_83
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_83 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 38485141 - 38484921
Alignment:
| Q |
3 |
ttcttcactatcaggtctgataatctgtcgaaacaggtgtttgatacagtcatatgcttcaaccacagcgcatctcctgaactcgtacttacatatcttt |
102 |
Q |
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| T |
38485141 |
ttcttcactatcaggtctgataatctgtcgaaacaggtgtttgatacagtcatatgcttcaaccacagcgcatctcctgaactcatacttacatatcttt |
38485042 |
T |
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| Q |
103 |
ctccaaagcctcctatcatgagaatcaactagttctttagcctcgcttaaagccagtagcaactcattgcagagaagaaaacacggccaacgaataaccc |
202 |
Q |
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| T |
38485041 |
ctccaaagcctcctatcatgagaatcaactagttctttagcctcgcttaaagccagtagcaactcattgcagagaagaaaacacggccaacgaataaccc |
38484942 |
T |
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| Q |
203 |
taacattccaagcattgtttg |
223 |
Q |
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| T |
38484941 |
taacattccaagcattgtttg |
38484921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 30119411 - 30119326
Alignment:
| Q |
129 |
aactagttctttagcctcgcttaaagccagtagcaactcattgcagagaagaaaacacggccaacgaataaccctaacattccaag |
214 |
Q |
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| T |
30119411 |
aactagttctttggcctgactgagagcaagcagtaactcgttgcagagaagaaaacatggccaacgaataacccgaacattccaag |
30119326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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