View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_86 (Length: 239)
Name: NF10103_low_86
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_86 |
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| [»] scaffold0311 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36906368 - 36906590
Alignment:
| Q |
1 |
taaattacatttggcaagaataaagtcaacttcaaaagcttataaactataacagatgtgtcggttctttttataaaccatatcatattctattccttaa |
100 |
Q |
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| T |
36906368 |
taaattatatttggcaagaataaagccaacttcaaaagcttataaactataacagatgtgtcggttctttttataaaccatatcatattcgattccttaa |
36906467 |
T |
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| Q |
101 |
ttttccaaacttatgagttattctctatagcaatgagcttattttattcttggttgtttagtgttcacagtcaattccataaaacatcacaagtcttcca |
200 |
Q |
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| T |
36906468 |
ttttccaaacttgtgagttattctctataacaatgagcttattttattcttggttgtttagtgttcacaatcaattccataaaacatcacaagtcttcca |
36906567 |
T |
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| Q |
201 |
gaatggtaattttatcatgtttt |
223 |
Q |
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| T |
36906568 |
gaatggtaattttatcatgtttt |
36906590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 787 - 669
Alignment:
| Q |
79 |
catatcatattctattccttaattttccaaacttatgagttattctctatagcaatgagcttattttattcttggttgtttagtgttcacagtcaattcc |
178 |
Q |
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| T |
787 |
catatcataatcaattccttaattttccaaacttgtaagttattctatataacaatgagcttattctatccttggttctttagtgttcacaatcaattcc |
688 |
T |
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| Q |
179 |
ataaaacatcacaagtctt |
197 |
Q |
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| T |
687 |
ataaaccatcaaaagtctt |
669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 39992997 - 39992922
Alignment:
| Q |
122 |
tctctatagcaatgagcttattttattcttggttgtttagtgttcacagtcaattccataaaacatcacaagtctt |
197 |
Q |
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| T |
39992997 |
tctctagaacaatgagcttattttgtttttagttctttattcttcacaatcaattccataaaacataacaagtctt |
39992922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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