View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_87 (Length: 238)
Name: NF10103_low_87
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 7622892 - 7622690
Alignment:
| Q |
14 |
aaagattttataaatgaagatgatattgaaaagcttccttatcttaaattagtggtgaaagaaacattaagattattctctccatcgccattactattgc |
113 |
Q |
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| T |
7622892 |
aaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattgc |
7622793 |
T |
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| Q |
114 |
caagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatacatgggccatagaaagggatcctgaaaa |
213 |
Q |
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| T |
7622792 |
caagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaa |
7622693 |
T |
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| Q |
214 |
ttg |
216 |
Q |
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||| |
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| T |
7622692 |
ttg |
7622690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 7627443 - 7627241
Alignment:
| Q |
14 |
aaagattttataaatgaagatgatattgaaaagcttccttatcttaaattagtggtgaaagaaacattaagattattctctccatcgccattactattgc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||||| ||||||||||||| |
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| T |
7627443 |
aaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattgc |
7627344 |
T |
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| Q |
114 |
caagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatacatgggccatagaaagggatcctgaaaa |
213 |
Q |
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| T |
7627343 |
caagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaa |
7627244 |
T |
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| Q |
214 |
ttg |
216 |
Q |
| |
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||| |
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| T |
7627243 |
ttg |
7627241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7634575 - 7634355
Alignment:
| Q |
18 |
attttataaatgaagatgatattgaaaagcttccttatcttaaattagtggtgaaagaaacattaagattattctctccatcgccattactattgccaag |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| | |||||||| | ||||| ||||||||| | ||||| |
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| T |
7634575 |
attttataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccattactagtaccaag |
7634476 |
T |
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| Q |
118 |
agaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatacatgggccatagaaagggatcctgaaaattga |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||| ||||| |
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| T |
7634475 |
agaaacaatagaaaattgtaacatagatggttatgagattaaaccaaaaactttagtgtatgttaatgcatgggccataggaagggatcctgagaattgg |
7634376 |
T |
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| Q |
218 |
gaagaacatgaggagttttat |
238 |
Q |
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|||| | ||| ||||||||| |
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| T |
7634375 |
aaagaccctgaagagttttat |
7634355 |
T |
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