View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_91 (Length: 229)

Name: NF10103_low_91
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_91
NF10103_low_91
[»] scaffold0598 (1 HSPs)
scaffold0598 (37-229)||(6877-7070)
[»] chr4 (13 HSPs)
chr4 (36-85)||(26207364-26207414)
chr4 (36-85)||(22681578-22681628)
chr4 (37-85)||(48406386-48406435)
chr4 (36-85)||(25161881-25161932)
chr4 (36-85)||(28196349-28196400)
chr4 (36-85)||(28196773-28196824)
chr4 (36-85)||(32703650-32703701)
chr4 (36-85)||(56505696-56505747)
chr4 (36-85)||(3930480-3930530)
chr4 (36-85)||(23539844-23539893)
chr4 (36-85)||(48405965-48406015)
chr4 (39-85)||(9380744-9380792)
chr4 (36-75)||(26207746-26207786)
[»] chr1 (21 HSPs)
chr1 (36-85)||(9347551-9347601)
chr1 (34-85)||(1176720-1176772)
chr1 (36-85)||(44911028-44911079)
chr1 (36-85)||(17518602-17518652)
chr1 (36-85)||(20371353-20371403)
chr1 (36-85)||(27172119-27172169)
chr1 (40-85)||(49318170-49318216)
chr1 (48-85)||(19007738-19007775)
chr1 (37-85)||(20480613-20480662)
chr1 (36-85)||(8108993-8109044)
chr1 (36-85)||(9347129-9347180)
chr1 (36-85)||(32163043-32163094)
chr1 (36-85)||(39692000-39692051)
chr1 (36-85)||(47955309-47955360)
chr1 (36-85)||(50430081-50430132)
chr1 (36-85)||(13589659-13589709)
chr1 (36-85)||(20480171-20480221)
chr1 (47-85)||(49317755-49317793)
chr1 (36-85)||(50615621-50615671)
chr1 (36-85)||(50623449-50623499)
chr1 (39-85)||(46823846-46823894)
[»] chr3 (16 HSPs)
chr3 (37-85)||(8315083-8315132)
chr3 (36-85)||(42672981-42673031)
chr3 (35-85)||(20969018-20969070)
chr3 (36-85)||(47666335-47666386)
chr3 (36-85)||(48159900-48159951)
chr3 (36-85)||(48160333-48160384)
chr3 (39-85)||(53688306-53688353)
chr3 (36-85)||(1928434-1928484)
chr3 (36-85)||(3353131-3353181)
chr3 (36-85)||(22429596-22429646)
chr3 (36-85)||(24485460-24485510)
chr3 (36-85)||(26007185-26007235)
chr3 (36-85)||(40848524-40848574)
chr3 (36-85)||(42673296-42673346)
chr3 (36-85)||(47871122-47871172)
chr3 (38-81)||(3353553-3353597)
[»] chr6 (7 HSPs)
chr6 (36-86)||(3825529-3825580)
chr6 (36-85)||(29074372-29074422)
chr6 (36-85)||(29079136-29079186)
chr6 (36-85)||(29106945-29106995)
chr6 (34-85)||(10039679-10039731)
chr6 (40-85)||(30388065-30388111)
chr6 (36-75)||(33974299-33974339)
[»] chr2 (12 HSPs)
chr2 (36-90)||(16911269-16911324)
chr2 (36-85)||(19141447-19141497)
chr2 (36-85)||(5378664-5378715)
chr2 (36-85)||(8851151-8851202)
chr2 (36-85)||(17850981-17851032)
chr2 (36-85)||(20347464-20347515)
chr2 (36-85)||(30190926-30190977)
chr2 (36-85)||(37720207-37720258)
chr2 (36-85)||(41790912-41790963)
chr2 (36-85)||(32673143-32673193)
chr2 (40-85)||(43495609-43495655)
chr2 (34-85)||(6171454-6171507)
[»] scaffold0110 (1 HSPs)
scaffold0110 (36-85)||(45807-45857)
[»] scaffold0069 (1 HSPs)
scaffold0069 (36-85)||(50507-50557)
[»] chr5 (16 HSPs)
chr5 (36-85)||(22428937-22428987)
chr5 (36-85)||(22729440-22729490)
chr5 (37-85)||(9665828-9665876)
chr5 (36-75)||(11350822-11350861)
chr5 (36-85)||(12498570-12498621)
chr5 (36-85)||(12498928-12498979)
chr5 (36-85)||(21207229-21207280)
chr5 (36-85)||(26571164-26571215)
chr5 (36-85)||(34576870-34576920)
chr5 (36-85)||(37610205-37610255)
chr5 (36-85)||(37780323-37780373)
chr5 (36-85)||(43463759-43463809)
chr5 (36-85)||(19514528-19514580)
chr5 (38-85)||(31569910-31569958)
chr5 (38-85)||(37610620-37610668)
chr5 (38-85)||(43464194-43464242)
[»] chr7 (17 HSPs)
chr7 (37-85)||(6908485-6908534)
chr7 (48-85)||(27096050-27096087)
chr7 (48-85)||(27182216-27182253)
chr7 (36-94)||(10533028-10533088)
chr7 (36-85)||(3687656-3687707)
chr7 (36-85)||(9035293-9035344)
chr7 (36-85)||(9412325-9412376)
chr7 (36-85)||(20418891-20418942)
chr7 (36-85)||(37888836-37888887)
chr7 (36-85)||(37889259-37889310)
chr7 (36-85)||(37972396-37972447)
chr7 (36-85)||(3204672-3204721)
chr7 (36-85)||(13744233-13744283)
chr7 (38-95)||(18864404-18864462)
chr7 (36-85)||(22740591-22740641)
chr7 (43-85)||(42419037-42419079)
chr7 (36-85)||(48359323-48359373)
[»] chr8 (6 HSPs)
chr8 (36-85)||(765737-765788)
chr8 (36-85)||(25438795-25438846)
chr8 (36-85)||(41662403-41662454)
chr8 (36-85)||(13936726-13936776)
chr8 (38-85)||(12281127-12281176)
chr8 (38-85)||(43162237-43162285)
[»] scaffold0460 (1 HSPs)
scaffold0460 (36-85)||(763-813)
[»] scaffold0319 (1 HSPs)
scaffold0319 (36-85)||(6697-6747)
[»] scaffold0002 (1 HSPs)
scaffold0002 (36-85)||(411926-411976)
[»] scaffold0001 (1 HSPs)
scaffold0001 (36-85)||(183663-183713)
[»] scaffold0015 (1 HSPs)
scaffold0015 (38-85)||(17158-17206)


Alignment Details
Target: scaffold0598 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 37 - 229
Target Start/End: Original strand, 6877 - 7070
Alignment:
Q  37 gggtgcaaaatgcacaattggcaaaatataggggggaaagtgcaattaatcttagaaaatatttatgctcaa-cttttagtgnnnnnnnttgctacaatt 135  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||       |||||||||||    
T  6877 gggtgcaaaatgcacaattggcaaaagataggggggaaagtgcaattaagcttagaaaatatttatgctcaaacttttagtgaaaaaaattgctacaatt 6976  T
Q  136 tttaatacatttctaccaataaaatcattaatatttcccttaagaacaaatgttagtattttctatattttatacttttgtttcatattattac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  6977 tttaatacatttctaccaataaaatcattaatatttcccttaagaacaaatgttagtattttcaatattttatactttggtttcatattattac 7070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 26207414 - 26207364
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  26207414 ggggtgcaaaatcgcacaattggcaaactataggggggaaagtgcaattaa 26207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 22681628 - 22681578
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  22681628 ggggtgcaaaatcgcacaattgacaaaagataggggggaaagtgcaattaa 22681578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 48406386 - 48406435
Alignment:
Q  37 gggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  48406386 gggtgcaaaatcgcacaattggcaaattataggggggaaagtacaattaa 48406435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 25161932 - 25161881
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  25161932 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 25161881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 28196400 - 28196349
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  28196400 ggggtgcaaaatcgcacaattggcaaattataggggggaaaagtgcaattaa 28196349  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 28196773 - 28196824
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  28196773 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 28196824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 32703650 - 32703701
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  32703650 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 32703701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 56505747 - 56505696
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  56505747 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 56505696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 3930480 - 3930530
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||| |||||| |||||||| |||||||||||||    
T  3930480 ggggtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaa 3930530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 23539893 - 23539844
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  23539893 ggggtgcaaaatcgcacaattggcaaactata-gggggaaagtgcaattaa 23539844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 48406015 - 48405965
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||| |||||||||| ||||||||| |||||||||||||    
T  48406015 ggggtgcaaaattgcataattggcaaactatagggggaaaagtgcaattaa 48405965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 9380744 - 9380792
Alignment:
Q  39 gtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  9380744 gtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 9380792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 26207746 - 26207786
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaa 75  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  26207746 ggggtgcaaaatcgcacaattggcaaactataggggggaaa 26207786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 9347551 - 9347601
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  9347551 ggggtgcaaaattgcacaattggcaaactataggggggaaagtgcaattaa 9347601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 1176772 - 1176720
Alignment:
Q  34 gaggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  1176772 gagggatgcaaaatcgcacaattagcaaaatataggggggaaagtgcaattaa 1176720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 44911079 - 44911028
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagg-ggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  44911079 ggggtgcaaaatcgcacaattggcaaaatatagggggggaaagtgcaattaa 44911028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 17518602 - 17518652
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  17518602 ggggtgcaaaatcgcacaattggcaaaagatagggggaaaagtgcaattaa 17518652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 20371353 - 20371403
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  20371353 ggggtgcaaaatcgcacaattggcaaactatagggggaaaagtgcaattaa 20371403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 27172169 - 27172119
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  27172169 ggggtgcaaaatcgcacaattggcaaactatagggggaaaagtgcaattaa 27172119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 49318170 - 49318216
Alignment:
Q  40 tgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||    
T  49318170 tgcaaaatcgcacaattggcaaactataggggggaaagtgcaattaa 49318216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 19007775 - 19007738
Alignment:
Q  48 gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||||| |||||||||||||||||||||||    
T  19007775 gcacaattggcaaactataggggggaaagtgcaattaa 19007738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 20480613 - 20480662
Alignment:
Q  37 gggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  20480613 gggtgcaaaatcgcacaattggcaaactatagggggaaaagtgcaattaa 20480662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 8108993 - 8109044
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  8108993 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 8109044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 9347180 - 9347129
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  9347180 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 9347129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 32163043 - 32163094
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  32163043 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 32163094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 39692000 - 39692051
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  39692000 ggggtgcaaaatcgcacaattgacaaaatataggggggaaaagtgcaattaa 39692051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 47955360 - 47955309
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  47955360 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 47955309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 50430081 - 50430132
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  50430081 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 50430132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 13589659 - 13589709
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||| |||||| |||||||| |||||||||||||    
T  13589659 ggggtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaa 13589709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 20480221 - 20480171
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  20480221 ggggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 20480171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 49317793 - 49317755
Alignment:
Q  47 tgcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  49317793 tgcacaattggcaaactatagggggaaaagtgcaattaa 49317755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 50615621 - 50615671
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  50615621 ggggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 50615671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 50623449 - 50623499
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  50623449 ggggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 50623499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 46823894 - 46823846
Alignment:
Q  39 gtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  46823894 gtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 46823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 8315083 - 8315132
Alignment:
Q  37 gggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  8315083 gggtgcaaaatcgcacaattgacaaaatataggggggaaagtgcaattaa 8315132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 42673031 - 42672981
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  42673031 ggggtgcaaaatcgcacaattggcaaactatagggggaaaagtgcaattaa 42672981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 20969018 - 20969070
Alignment:
Q  35 aggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  20969018 aggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 20969070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 47666335 - 47666386
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  47666335 ggggtgcaaaattgcacaattggcaaactataggggggaaaagtgcaattaa 47666386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 48159951 - 48159900
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  48159951 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 48159900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 48160333 - 48160384
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatata-ggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  48160333 ggggtgcaaaatcgcacaattggcaaactatagggggggaaagtgcaattaa 48160384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 53688306 - 53688353
Alignment:
Q  39 gtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  53688306 gtgcaaaatcgcacaattggcaaactataggggagaaagtgcaattaa 53688353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 1928434 - 1928484
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| |||||| ||||| |||||||||    
T  1928434 ggggtgcaaaatcgcacaattggcaaaagatagggaggaaaatgcaattaa 1928484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 3353181 - 3353131
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  3353181 ggggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 3353131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 22429596 - 22429646
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| |||||| ||||||||||||||||    
T  22429596 ggggtgcaaaatcgcacaattgacaaactataggagggaaagtgcaattaa 22429646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 24485460 - 24485510
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| ||||||| | |||||||||||||    
T  24485460 ggggtgcaaaatcgcacaattggcaaactatagggagaaaagtgcaattaa 24485510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 26007235 - 26007185
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||||||| |||||||||    
T  26007235 ggggtgcaaaatcgcacaattgacaaactataggggggaaaatgcaattaa 26007185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 40848574 - 40848524
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||| ||||| |||||||||||||| ||||||||| |||||||||||||    
T  40848574 ggggtgtaaaatcgcacaattggcaaactatagggggaaaagtgcaattaa 40848524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 42673296 - 42673346
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  42673296 ggggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 42673346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 47871122 - 47871172
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||| |||||| |||||||| |||||||||||||    
T  47871122 ggggtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaa 47871172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 3353553 - 3353597
Alignment:
Q  38 ggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaa 81  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||    
T  3353553 ggtgcaaaatcgcacaattggcaaactatagggggaaaagtgcaa 3353597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 3825580 - 3825529
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaat 86  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  3825580 ggggtgcaaaatcgcacaattagcaaaatatagggggaaaagtgcaattaat 3825529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 29074372 - 29074422
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  29074372 ggggtgcaaaatcgcacaattggcaaactataggggggaaagagcaattaa 29074422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 29079136 - 29079186
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  29079136 ggggtgcaaaatcgcacaattggcaaactataggggggaaagagcaattaa 29079186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 29106945 - 29106995
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  29106945 ggggtgcaaaatcgcacaattggcaaactataggggggaaagagcaattaa 29106995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 10039731 - 10039679
Alignment:
Q  34 gaggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||||| |||||||| |||||| |||||||| |||||||||||||    
T  10039731 gaggggtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaa 10039679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 30388111 - 30388065
Alignment:
Q  40 tgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||    
T  30388111 tgcaaaatcgcacaattagcaaaagataggggggaaagtgcaattaa 30388065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 33974299 - 33974339
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaa 75  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  33974299 ggggtgcaaaatcgcacaattggcaaactataggggggaaa 33974339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 16911269 - 16911324
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaatctta 90  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||    
T  16911269 ggggtgcaaaatcgcacaattggcaaactataggggcgaaagtgcaattaagctta 16911324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 19141497 - 19141447
Alignment:
Q  36 ggggtgcaaaatgcacaattggcaaaatataggggg-gaaagtgcaattaa 85  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  19141497 ggggtgcaaaatgcacaattggcaaactatagggggaaaaagtgcaattaa 19141447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 5378715 - 5378664
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  5378715 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 5378664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 8851202 - 8851151
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  8851202 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 8851151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 17851032 - 17850981
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  17851032 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 17850981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 20347464 - 20347515
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  20347464 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 20347515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 30190977 - 30190926
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  30190977 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 30190926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 37720258 - 37720207
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  37720258 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 37720207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 41790912 - 41790963
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||| ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  41790912 ggggggcaaaatcgcacaattggcaaaatataggggggaaaagtgcaattaa 41790963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 32673143 - 32673193
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| |||||||  |||||||||||||    
T  32673143 ggggtgcaaaatcgcacaattggcaaaagataggggaaaaagtgcaattaa 32673193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 43495609 - 43495655
Alignment:
Q  40 tgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||    
T  43495609 tgcaaaatcgcacaattagcaaaatataggtgggaaagtgcaattaa 43495655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 6171454 - 6171507
Alignment:
Q  34 gaggggtgcaaaatgc-acaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||||| | ||||||||||||| ||||||||| |||||||||||||    
T  6171454 gaggggtgcaaaatcccacaattggcaaaagataggggggaaaagtgcaattaa 6171507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 45807 - 45857
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  45807 ggggtgcaaaatcgcacaattggcaaaagatagggggaaaagtgcaattaa 45857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 50507 - 50557
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  50507 ggggtgcaaaatcgcacaattggcaaactatagggggaaaagtgcaattaa 50557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 22428987 - 22428937
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  22428987 ggggtgcaaaatcgcacaattagcaaaagataggggggaaagtgcaattaa 22428937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 22729440 - 22729490
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  22729440 ggggtgcaaaatcgcacaattggcaaattatagggggaaaagtgcaattaa 22729490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 9665828 - 9665876
Alignment:
Q  37 gggtgcaaaatgcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||||||||||||| |||||| |||||||| |||||| ||||||    
T  9665828 gggtgcaaaatgcacaattagcaaaagatagggggaaaagtggaattaa 9665876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 11350861 - 11350822
Alignment:
Q  36 ggggtgcaaaatgcacaattggcaaaatataggggggaaa 75  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  11350861 ggggtgcaaaatgcacaattggcaaaagataggggtgaaa 11350822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 12498621 - 12498570
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  12498621 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 12498570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 12498928 - 12498979
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  12498928 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 12498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 21207280 - 21207229
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  21207280 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 21207229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 26571164 - 26571215
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  26571164 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 26571215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 34576920 - 34576870
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||| ||||| |||||||| |||||| ||||||||||||||||||||||    
T  34576920 ggggtgtaaaatcgcacaattagcaaaagataggggggaaagtgcaattaa 34576870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 37610255 - 37610205
Alignment:
Q  36 ggggtgcaaaatg-cacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||||||  ||||||||||||| ||||||||| |||||||||||||    
T  37610255 ggggtgcaaaatcacacaattggcaaactatagggggaaaagtgcaattaa 37610205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 37780373 - 37780323
Alignment:
Q  36 ggggtgcaaaatg-cacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||||||  ||||||||||||| ||||||||| |||||||||||||    
T  37780373 ggggtgcaaaatcacacaattggcaaactatagggggaaaagtgcaattaa 37780323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 43463809 - 43463759
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||| |||| |||||||||||||    
T  43463809 ggggtgcaaaatcgcacaattggcaaactataaggggaaaagtgcaattaa 43463759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 19514580 - 19514528
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatata--ggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| ||||  |||||||||||||||||||    
T  19514580 ggggtgcaaaatcgcacaattggcaaactataggggggggaaagtgcaattaa 19514528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 31569958 - 31569910
Alignment:
Q  38 ggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||| ||||||||| ||||| |||||||| |||||||||||||    
T  31569958 ggtgcaaaatcgcacaattgacaaaagatagggggaaaagtgcaattaa 31569910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 37610620 - 37610668
Alignment:
Q  38 ggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||| |||||||| ||||| ||||||||||||||| |||||||    
T  37610620 ggtgcaaaatcgcacaattagcaaactataggggggaaagtacaattaa 37610668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 43464194 - 43464242
Alignment:
Q  38 ggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  43464194 ggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 43464242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 6908485 - 6908534
Alignment:
Q  37 gggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  6908485 gggtgcaaaatcgcacaattagcaaaaaataggggggaaagtgcaattaa 6908534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 27096087 - 27096050
Alignment:
Q  48 gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27096087 gcacaattagcaaaatataggggggaaagtgcaattaa 27096050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 27182216 - 27182253
Alignment:
Q  48 gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27182216 gcacaattagcaaaatataggggggaaagtgcaattaa 27182253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 10533088 - 10533028
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaatcttagaaa 94  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||||| | ||||||    
T  10533088 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcctagaaa 10533028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 3687656 - 3687707
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  3687656 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 3687707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 9035293 - 9035344
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  9035293 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 9035344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 9412325 - 9412376
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  9412325 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 9412376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 20418942 - 20418891
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  20418942 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 20418891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 37888887 - 37888836
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  37888887 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 37888836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 37889259 - 37889310
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  37889259 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 37889310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 37972396 - 37972447
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  37972396 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 37972447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 3204721 - 3204672
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  3204721 ggggtgcaaaatcgcacaattggcaaactata-gggggaaagtgcaattaa 3204672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 13744233 - 13744283
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  13744233 ggggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 13744283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 18864404 - 18864462
Alignment:
Q  38 ggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaatcttagaaaa 95  Q
    |||||||||| |||||||||||||| ||||||||| ||||| ||||||| | |||||||    
T  18864404 ggtgcaaaatcgcacaattggcaaactatagggggaaaagtacaattaagcctagaaaa 18864462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 22740591 - 22740641
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  22740591 ggggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 22740641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 42419037 - 42419079
Alignment:
Q  43 aaaatgcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||| |||||||||||||| ||||||||| |||||||||||||    
T  42419037 aaaacgcacaattggcaaactatagggggaaaagtgcaattaa 42419079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 48359373 - 48359323
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  48359373 ggggtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaa 48359323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 765788 - 765737
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  765788 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 765737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 25438846 - 25438795
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  25438846 ggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 25438795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 41662403 - 41662454
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  41662403 ggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 41662454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 13936776 - 13936726
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||| |||| |||||||| |||||||||||||    
T  13936776 ggggtgcaaaatcgcacaattggtaaaagatagggggaaaagtgcaattaa 13936726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 12281176 - 12281127
Alignment:
Q  38 ggtgcaaaat-gcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  12281176 ggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 12281127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 43162285 - 43162237
Alignment:
Q  38 ggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  43162285 ggtgcaaaatcgcacaattaacaaaatatagggggaaaagtgcaattaa 43162237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 763 - 813
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||||||||| ||||||||  |||||||||||||    
T  763 ggggtgcaaaatcgcacaattggcaaactataggggaaaaagtgcaattaa 813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 6697 - 6747
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| |||||||| |||||| |||||||| |||||||||||||    
T  6697 ggggtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaa 6747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 411976 - 411926
Alignment:
Q  36 ggggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||||| ||||||||| ||||| |||||||| |||||||||||||    
T  411976 ggggtgcaaaatcgcacaattgacaaaagatagggggtaaagtgcaattaa 411926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 183663 - 183713
Alignment:
Q  36 ggggtgcaaaatgcacaattggcaaaatatagggggg-aaagtgcaattaa 85  Q
    ||||||||||  |||||||| |||||||||||||||| |||||||||||||    
T  183663 ggggtgcaaatcgcacaattagcaaaatataggggggaaaagtgcaattaa 183713  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 17158 - 17206
Alignment:
Q  38 ggtgcaaaat-gcacaattggcaaaatataggggggaaagtgcaattaa 85  Q
    |||||||||| |||||||| |||||| |||||||| |||||||||||||    
T  17158 ggtgcaaaattgcacaattagcaaaagatagggggaaaagtgcaattaa 17206  T

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