View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_93 (Length: 229)
Name: NF10103_low_93
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_93 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 36506246 - 36506466
Alignment:
| Q |
6 |
atttattagatatatcaccaaacaaatacaaggtgtatttgctggagttgttacacagcccctaaataaggggaacnnnnnnnnnnnntcaggcaaccaa |
105 |
Q |
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| T |
36506246 |
atttattagatatatcaccaaacaaacacaaggtgtatttgctggagttgttacacagcccctaaataaggggaacaaaaacaaaaaattaggcaaccaa |
36506345 |
T |
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| Q |
106 |
gatgcacaacacacaactgcagaaaaacagaatagaggccgaacaactaacaacaacaaaccctctacgctaactagcaaaatctgagaagctaagaaca |
205 |
Q |
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| T |
36506346 |
gatgcacaatacacaac---agaaaaacagaacagaggccaaacaactaacaacaacaacccctctacgccaactagcaaaatctgagaagctaagaaca |
36506442 |
T |
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| Q |
206 |
aaaaacaccaaaaaccaaacagca |
229 |
Q |
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||||||| |||||||||||||||| |
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| T |
36506443 |
aaaaacagcaaaaaccaaacagca |
36506466 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 1548334 - 1548289
Alignment:
| Q |
6 |
atttattagatatatcaccaaacaaatacaaggtgtatttgctgga |
51 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1548334 |
atttattagatatatcaccaaacaaacacaaggtgtatttgctgga |
1548289 |
T |
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