View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10103_low_96 (Length: 223)
Name: NF10103_low_96
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_96 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 47875045 - 47874932
Alignment:
| Q |
105 |
gagaataatgattgtaaatatagaattacaaccttgccctcctgttctgaaaccacacctccacttgtctcgtcccaagattcagcttgcttgccaattc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47875045 |
gagaataatgattgtaaatatagaattacaaccttgccctcctgttctgaaaccacacctccacttgtctcgtcccaagattcagcttgcttgccaattc |
47874946 |
T |
|
| Q |
205 |
ttgcctttgcttct |
218 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
47874945 |
ttgcttttgcttct |
47874932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 47875193 - 47875111
Alignment:
| Q |
17 |
catatattatatcttaattaaacatgattattacatatatataagaattttatttgtatgcacctacgtcgtgtaacatgcatttaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47875193 |
catatattatatcttaattaaacatgattattacatata----agaattttatttgtatgcacctacgttgtgtaacatgcatttaa |
47875111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University