View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_high_15 (Length: 349)
Name: NF10104A_high_15
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 75 - 337
Target Start/End: Original strand, 33067088 - 33067350
Alignment:
| Q |
75 |
ctatggatctgtctaatctaattccattatcaaacagttgtaggttcaatacaaagctttggagtttgaacttgaatctgttgaacctgtaaacttctca |
174 |
Q |
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| T |
33067088 |
ctatggatctgtctaatctaattccattatcaaacagttgtaggttcaatacaaagctttggagtttgaacttgaatctgttgaacctgtaaacttctca |
33067187 |
T |
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| Q |
175 |
atggagccaaacttgaacctgatcttcttttccaaagactattctcacttttgtttccttcttccaacttattcaccctcttgatcacaggtaaaggagg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067188 |
atggagccaaacttgaacctgatcttcttttccaaagactattctcacttttgtttccttcttccaacttattcaccctcttgatcacaggtaaaggagg |
33067287 |
T |
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| Q |
275 |
atccatttcatcaatttttataccaacaacaacattctcattcctactacacctttcaatatt |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33067288 |
atccatttcatcaatttttataccaacaacaacattctcattcctaatacacctttcaatatt |
33067350 |
T |
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