View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_high_17 (Length: 342)
Name: NF10104A_high_17
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_high_17 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 20900585 - 20900905
Alignment:
| Q |
1 |
ggacattcagccagttgagctttttggacagctgtttgtttcactagtaagttctctctatttgttattttatgatctaagtttcttttgttatttctaa |
100 |
Q |
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| T |
20900585 |
ggacattcagccagttgagctttttggacagctgtttgtttcactagtaagttctctctatttgttattttatgatctaagtttcttttgttatttctaa |
20900684 |
T |
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| Q |
101 |
gttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgttaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20900685 |
gttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgttaagt |
20900784 |
T |
|
| Q |
201 |
gtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20900785 |
gtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttttagaacatatatgctgattaaaata |
20900884 |
T |
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| Q |
301 |
agatttgcttcttgtcatatg |
321 |
Q |
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||||||| ||||||||||||| |
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| T |
20900885 |
agatttgtttcttgtcatatg |
20900905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 96 - 321
Target Start/End: Original strand, 13950234 - 13950458
Alignment:
| Q |
96 |
tctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgt |
195 |
Q |
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| T |
13950234 |
tctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctga |
13950333 |
T |
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| Q |
196 |
taagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgatta |
295 |
Q |
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| T |
13950334 |
tcagtgattaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgatta |
13950432 |
T |
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| Q |
296 |
aaataagatttgcttcttgtcatatg |
321 |
Q |
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| T |
13950433 |
aaatatgatttgcttcttgtcatatg |
13950458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 96 - 321
Target Start/End: Original strand, 2374 - 2598
Alignment:
| Q |
96 |
tctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgt |
195 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| || |
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| T |
2374 |
tctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctga |
2473 |
T |
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| Q |
196 |
taagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgatta |
295 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |
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| T |
2474 |
tcagtgattaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgatta |
2572 |
T |
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| Q |
296 |
aaataagatttgcttcttgtcatatg |
321 |
Q |
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||||| |||||||||||||||||||| |
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| T |
2573 |
aaatatgatttgcttcttgtcatatg |
2598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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