View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_high_24 (Length: 312)

Name: NF10104A_high_24
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_high_24
NF10104A_high_24
[»] chr4 (1 HSPs)
chr4 (36-312)||(34048700-34048988)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 36 - 312
Target Start/End: Original strand, 34048700 - 34048988
Alignment:
Q  36 caccttataaacatggtgattatgaaactcattatcatata--aaactattttgatatggcttttacaaagcccgcgccac---------tgcactgaac 124  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||         |||| |||||    
T  34048700 caccttataaacatggtgattatgaaactcattatcatatataaaactattttgatatggcttttacaaagcccgcgccacaacaaatcctgcaatgaac 34048799  T
Q  125 caatctaatcaagattccttctcttttcaataggtttggaaatagacttctccatcacaaaaaagtgcattctcaacccccaaagaaaaatttgtgcaac 224  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34048800 caatctaatcaagattccttctcttgtcaataggcttggaaatagacttctccatcacaaaaaagtgcattctcaacccccaaagaaaaatttgtgcaac 34048899  T
Q  225 ttttacaagtatatcttaaggagctccttgttcctaattccacagttagaaacaatggcaatgacatgaaccatc-ttagctaaatcct 312  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  34048900 ttttacaagtatatcttaaggaactccttgttcctaattccacagttggaaacaatggcaatgacatgaaccatctttagctaaatcct 34048988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University