View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_high_6 (Length: 452)

Name: NF10104A_high_6
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_high_6
NF10104A_high_6
[»] chr4 (7 HSPs)
chr4 (23-412)||(4122919-4123308)
chr4 (291-412)||(4362452-4362572)
chr4 (301-412)||(4346265-4346376)
chr4 (291-412)||(4336802-4336922)
chr4 (80-261)||(4336581-4336751)
chr4 (303-412)||(4319577-4319686)
chr4 (117-171)||(3746505-3746561)
[»] chr7 (2 HSPs)
chr7 (99-161)||(2087329-2087391)
chr7 (93-177)||(36424650-36424734)
[»] chr3 (1 HSPs)
chr3 (119-205)||(9233222-9233308)
[»] chr2 (1 HSPs)
chr2 (89-159)||(31062194-31062264)
[»] chr5 (4 HSPs)
chr5 (114-180)||(7566378-7566446)
chr5 (130-172)||(12045575-12045617)
chr5 (104-171)||(26683695-26683764)
chr5 (119-177)||(10515804-10515864)
[»] chr8 (1 HSPs)
chr8 (128-192)||(10659451-10659515)
[»] chr1 (1 HSPs)
chr1 (105-177)||(31659661-31659732)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 23 - 412
Target Start/End: Complemental strand, 4123308 - 4122919
Alignment:
Q  23 aaataattttaatttttaggaaaatgtttggtagacacctaaacaccttaagcgagagagacagagagaaataacaagagtgatgtgataaatttgatat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4123308 aaataattttaatttttaggaaaatgtttggtagacacctaaacaccttaagcgagagagacagagagaaataacaagagtgatgtgatagatttgatat 4123209  T
Q  123 gttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4123208 gttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactg 4123109  T
Q  223 atcaaaatacgaataattatcttatgaggagtattatatcattgttaaatgattgtgatattagtatttatttccacttttttacagaatttgactgtcg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4123108 atcaaaatacgaataattatcttatgaggagtattatatcattgttaaatgattgtgatattagtgtttatttccacttttttacagaatttgactgtcg 4123009  T
Q  323 atgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtttttgatgtcc 412  Q
    | ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  4123008 acgggggtggtagtgttttgctcccctgtgataattacccaaattggttaagtttcaactccaaaggttattctgttgtttttgaagtcc 4122919  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 291 - 412
Target Start/End: Original strand, 4362452 - 4362572
Alignment:
Q  291 tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt 390  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||||| ||||||||    
T  4362452 tatttccactttt-tacagaatttgactgtcgatgggcgtggtagttttttgctccctggtgatgattacccaaattggttaagtttcaacgccaaaggt 4362550  T
Q  391 tattctgtagtttttgatgtcc 412  Q
    ||||||||| ||||||| ||||    
T  4362551 tattctgtaatttttgaagtcc 4362572  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 301 - 412
Target Start/End: Original strand, 4346265 - 4346376
Alignment:
Q  301 tttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtag 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||     
T  4346265 tttttacagaatttgactgtcgatgggcgtggtagttttttgctccccggtgataattacccaaattggtcaactttcaactccaaaggttattctgtaa 4346364  T
Q  401 tttttgatgtcc 412  Q
    | ||||| ||||    
T  4346365 tctttgaagtcc 4346376  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 412
Target Start/End: Original strand, 4336802 - 4336922
Alignment:
Q  291 tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt 390  Q
    |||||||||||| | ||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||| |||||||||||||  ||||||||| ||||||    
T  4336802 tatttccactttct-acagaatgtgactgtcgatgggtgtggtagctttttgctccccagtgatgattacccaaattggttagctttcaactcgaaaggt 4336900  T
Q  391 tattctgtagtttttgatgtcc 412  Q
    |||||||||  |||||| ||||    
T  4336901 tattctgtaaattttgaagtcc 4336922  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 80 - 261
Target Start/End: Original strand, 4336581 - 4336751
Alignment:
Q  80 gagacagagagaaataacaagagtgatgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgttt 179  Q
    |||| ||| |||||||  |||||| | |||||| |||||||| |||| ||||||||||||||||||||        || ||| | | | ||||| |||||    
T  4336581 gagagagaaagaaatagaaagagtaacgtgatagatttgataagttgatgatgtgataggaagagaga--------aattgaggagctgaatgattgttt 4336672  T
Q  180 ggaaaattggggtgtccaaatatcattgttttaatttttactgatcaaaatacgaataattatcttatgaggagtattatat 261  Q
     ||||||||||||||||||||||||||||| ||||||||| | ||||||||||   |||||||||| |||||| | ||||||    
T  4336673 cgaaaattggggtgtccaaatatcattgttgtaatttttatttatcaaaatac---taattatcttttgaggaatgttatat 4336751  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 4319686 - 4319577
Alignment:
Q  303 tttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtt 402  Q
    |||||||||||||||| |||||| || |||| ||||||  ||||| |||||||||| |||  ||||||||  |||||| ||  |||||| ||||||| ||    
T  4319686 tttacagaatttgactatcgatgagcatggtcgtttttcactcccttgtgataattacccggattggttagctttcaattcagaaggttcttctgtaatt 4319587  T
Q  403 tttgatgtcc 412  Q
    ||||| ||||    
T  4319586 tttgaagtcc 4319577  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 3746561 - 3746505
Alignment:
Q  117 tgatatgttggtgatgtgataggaaga--gagataaagagaaaatgaagtgttaaat 171  Q
    ||||| ||||||||| ||||| |||||  |||||| |||||||||||||||||||||    
T  3746561 tgataggttggtgatatgataagaagatagagatagagagaaaatgaagtgttaaat 3746505  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 2087391 - 2087329
Alignment:
Q  99 agagtgatgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaatga 161  Q
    ||||| ||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||    
T  2087391 agagtaatgtgataaatgtgatatattgttaatgtgataggaagagagataaagagaaaatga 2087329  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 36424650 - 36424734
Alignment:
Q  93 ataacaagagtgatgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgt 177  Q
    ||||||| ||||||||| |  || |||| ||| | || ||||||||||||||| ||||||||||||| || |||||||| |||||    
T  36424650 ataacaaaagtgatgtgtttgatatgatgtgtagttggtgtgataggaagagaaataaagagaaaataaaatgttaaataagtgt 36424734  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 9233308 - 9233222
Alignment:
Q  119 atatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcat 205  Q
    |||||||| |||||||||| |||||||||| |||| ||||||||||||| ||||||||| || ||| || ||||||  |||||||||    
T  9233308 atatgttgatgatgtgataagaagagagatgaagataaaatgaagtgttgaatgagtgtatgtaaagttagggtgttaaaatatcat 9233222  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 31062264 - 31062194
Alignment:
Q  89 agaaataacaagagtgatgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaat 159  Q
    ||||| || |||| ||||||||||||| |||||| ||||||||||||||| |||||||||| | |||||||    
T  31062264 agaaacaaaaagaatgatgtgataaatatgatattttggtgatgtgatagaaagagagatacatagaaaat 31062194  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 7566378 - 7566446
Alignment:
Q  114 atttgatatgttggtgatgtgataggaagagaga--taaagagaaaatgaagtgttaaatgagtgtttg 180  Q
    |||||||| |||| |||| |||||||||||||||  || ||||||||||||||||||||| | ||||||    
T  7566378 atttgataggttgatgatatgataggaagagagagatagagagaaaatgaagtgttaaataaatgtttg 7566446  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 12045575 - 12045617
Alignment:
Q  130 atgtgataggaagagagataaagagaaaatgaagtgttaaatg 172  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  12045575 atgtgataggaagagagatatagagaaaatgaattgttgaatg 12045617  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 26683695 - 26683764
Alignment:
Q  104 gatgtgataaatttgatatgttggtgatgtgatagga--agagagataaagagaaaatgaagtgttaaat 171  Q
    |||||||||||| | |||| || ||||||||||||||  | ||||||| |||||||||||||| ||||||    
T  26683695 gatgtgataaatcttatatattagtgatgtgataggagtaaagagatatagagaaaatgaagtattaaat 26683764  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 10515804 - 10515864
Alignment:
Q  119 atatgttggtgatgtgataggaagaga--gataaagagaaaatgaagtgttaaatgagtgt 177  Q
    |||| ||| ||||||||||||||||||  ||||||||||||||||| |||| || ||||||    
T  10515804 atatattgatgatgtgataggaagagatagataaagagaaaatgaaatgttgaacgagtgt 10515864  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 10659515 - 10659451
Alignment:
Q  128 tgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggt 192  Q
    |||||| |||| || |||||||||||  |||||| ||||| ||||| |||| |||||||||||||    
T  10659515 tgatgtaatagaaaaagagataaagattaaatgatgtgttgaatgaatgttaggaaaattggggt 10659451  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 31659732 - 31659661
Alignment:
Q  105 atgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgt 177  Q
    ||||||||||| |||||| |||||||| | ||| ||| ||||||| | ||||||||||||||| ||| |||||    
T  31659732 atgtgataaatatgatatattggtgatataataagaa-agagatatacagaaaatgaagtgtttaataagtgt 31659661  T

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