View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_10 (Length: 491)
Name: NF10104A_low_10
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 6 - 482
Target Start/End: Original strand, 44560129 - 44560606
Alignment:
| Q |
6 |
cacaacattatcatcatctctactctcagtaaactctctttatagaagttagtcatcgtatcctttagctccgtatcatcttcaatataatctcccatta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44560129 |
cacaacattatcatcatctctactctcagtaaactatctttatagaagttagtcaccgtatcctttagctccgtatcatcttcaatataatctcccatta |
44560228 |
T |
|
| Q |
106 |
ctatttctcaacgagctggtcttttttctcctctttctgttagcagtttaacatgataggattagtatttctatccccatcatatacaaccagttagccc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44560229 |
ctatttctcaacgagctggtcttttttctcctctttctgttagcagtttaacatgataggattagtatttctatccccatcatatacaaccagttagccc |
44560328 |
T |
|
| Q |
206 |
gagacctctgatgccacatcattcctcctaatacaacactttagttaattccttatgcaaagaatgttcaagtcgagaaagataacgagactcatgtcat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44560329 |
gagacctctgatgccacatcattcctcctaatacaacacttcagttaattccttatgcaaagaatgttcaagtcgagaaagataacgagactcatgtcat |
44560428 |
T |
|
| Q |
306 |
gaggttgacg-cnnnnnnnnattgtctcctaaacaagccaacaattccttcttctttattacactaccaaagtaaattgtcctccacatcttcaattcaa |
404 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44560429 |
gaggttgacgtcttttttttattgtctcctaaacaagccaacaattccttcttctttattacactaccaaagttaattgtcctccacatcttcaattcaa |
44560528 |
T |
|
| Q |
405 |
cctctaccttgctcaacttctcaatcaaatcatgaccaagattccaccatctgatcaaatccattttaaaatagtcat |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44560529 |
cctctaccttgctcaacttctcaatcaaatcatgaccatgattccaccatctgatcaaatccattttaaaatagtcat |
44560606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University