View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_103 (Length: 331)
Name: NF10104A_low_103
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_103 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 41 - 325
Target Start/End: Original strand, 35275180 - 35275464
Alignment:
| Q |
41 |
tcaattcacaatcctgcaattctttctgatctcaccattagtccaagtaagaggactaattttactcatcttcaccatagcagtagcaaagtctctagaa |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35275180 |
tcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaa |
35275279 |
T |
|
| Q |
141 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35275280 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
35275379 |
T |
|
| Q |
241 |
taagggccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
325 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35275380 |
taaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
35275464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 45 - 325
Target Start/End: Original strand, 35289296 - 35289576
Alignment:
| Q |
45 |
ttcacaatcctgcaattctttctgatctcaccattagtccaagtaagaggactaattttactcatcttcaccatagcagtagcaaagtctctagaaaaag |
144 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
35289296 |
ttcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattctactcatcttcaccatagcagctgcaaagtctcttttaaaag |
35289395 |
T |
|
| Q |
145 |
cagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataag |
244 |
Q |
| |
|
|| | || ||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| ||| |
|
|
| T |
35289396 |
caatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagcaacaag |
35289495 |
T |
|
| Q |
245 |
ggccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
325 |
Q |
| |
|
| | ||||| |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
35289496 |
gtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtagg |
35289576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 319
Target Start/End: Original strand, 35307093 - 35307368
Alignment:
| Q |
41 |
tcaattcacaatcctgcaattctttctgatctcaccattagtccaagtaagaggactaattttactcatcttcaccatagcagtagcaaagtctctagaa |
140 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
35307093 |
tcaattcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattttactcagtttcaccatagcaacggcaaagtctctagaa |
35307192 |
T |
|
| Q |
141 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
240 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||| | |||||| ||| |||||||||| ||||||||||||| | ||||||||| | |||| |
|
|
| T |
35307193 |
aaagtagcaccattggtactataactcctaaccaaattatcttgaga---cccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaa |
35307289 |
T |
|
| Q |
241 |
taagggccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
319 |
Q |
| |
|
|||| ||||| |||||||| ||||| | |||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
35307290 |
caaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcaccaccaga |
35307368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 43 - 319
Target Start/End: Original strand, 35279949 - 35280225
Alignment:
| Q |
43 |
aattcacaatcctgcaattctttctgatctcaccattagtccaagtaagaggactaattttactcatcttcaccatagcagtagcaaagtctctagaaaa |
142 |
Q |
| |
|
||||||||| |||||||||||||| || || |||||||||| || |||||||||||| | |||||||||||||||||| |||||||||||| ||| |
|
|
| T |
35279949 |
aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatcttcaccatagcaaaagcaaagtctcttctaaa |
35280048 |
T |
|
| Q |
143 |
agcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaata |
242 |
Q |
| |
|
|||| ||||| | ||||||| |||||||||||||| | |||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||| |
|
|
| T |
35280049 |
agcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaattaagaagtcctttattagcaact |
35280148 |
T |
|
| Q |
243 |
agggccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
319 |
Q |
| |
|
|| || ||||||||||||||||||| || |||| ||||||||||| || || ||||| |||||||| ||||| |
|
|
| T |
35280149 |
agatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaatttgtgtcaccgccaga |
35280225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 41 - 311
Target Start/End: Original strand, 35311436 - 35311703
Alignment:
| Q |
41 |
tcaattcacaatcctgcaattctttctgatctcaccattagtccaagtaagaggactaattttactcatcttcaccatagcagtagcaaagtctctagaa |
140 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
35311436 |
tcaattcacaagcctacaattctttctgatctccccattagtcccagtgagaggactgattttactcagtttcaccatagcagcagcaaagtctgtagaa |
35311535 |
T |
|
| Q |
141 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
240 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| | |||||| ||| ||||||||| |||||||||||||| | |||||||| | |||| |
|
|
| T |
35311536 |
aaagcagcctcattggtactataactcctaaccaaattatcttgaga---cccattattgaaaaggacttgatcagaatggaatagacctttgcttgcaa |
35311632 |
T |
|
| Q |
241 |
taagggccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtca |
311 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
35311633 |
caaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtca |
35311703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 319
Target Start/End: Original strand, 35322094 - 35322369
Alignment:
| Q |
41 |
tcaattcacaatcctgcaattctttctgatctcaccattagtccaagtaagaggactaattttactcatcttcaccatagcagtagcaaagtctctagaa |
140 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||| |||||||||| ||| |||||| |||||||||||| |||||||||||| |||||||||||| | |
|
|
| T |
35322094 |
tcaattcacaagcctacaattctttctaatctccccattagtcccagttagaggattaattttactcagtttcaccatagcaacagcaaagtctcttcta |
35322193 |
T |
|
| Q |
141 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
240 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||| | |||||| ||| |||||||||| ||||||||||||| | ||||||||| | |||| |
|
|
| T |
35322194 |
aaagtagcaccattggtactataactcctaaccaaattatcttgaga---cccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaa |
35322290 |
T |
|
| Q |
241 |
taagggccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
319 |
Q |
| |
|
||| ||||| |||||||||||||| || |||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
35322291 |
caagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtcaccaccaga |
35322369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University