View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_107 (Length: 327)
Name: NF10104A_low_107
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 321
Target Start/End: Complemental strand, 47726884 - 47726568
Alignment:
| Q |
5 |
agtttggtgttgggagaaagaacatgaccagtttggagaggattgaagaagaattagcacaaacaagagcattgattcagagagcaattcggttcaagaa |
104 |
Q |
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| T |
47726884 |
agtttggtgatgggagaaagaacatgactagtttggagaagattgaagaagatttagcacaaacaagagcattgattcagagagcaattcggtccaagaa |
47726785 |
T |
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| Q |
105 |
gtccacaaccaccatgnnnnnnngttttgttccaaaagggtccatttacttgaatccacatgcttttcaccagttaagtttaattataacaatttcaaat |
204 |
Q |
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| T |
47726784 |
gtccacaaccaacatgaaacagagttttgttccaaaagggtccatttacttgaatccacatgcttttcaccagttaagtttaattataacaatttcaaat |
47726685 |
T |
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| Q |
205 |
ctatgcttttccgctaaaccagtttggttatacttgtacaataatatgttttcccctaaaccaggagccacaaggagatggtgaagagattcaaggtatg |
304 |
Q |
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| T |
47726684 |
ctatgcttttcagctaaaccagtttggttatacttgtacaataatatgttttcccctaaaccaggagccacaaggagatggtgaagagattcaaggtatg |
47726585 |
T |
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| Q |
305 |
ggtatacaaggaaggag |
321 |
Q |
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| T |
47726584 |
ggtatacaaggaaggag |
47726568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 47729569 - 47729513
Alignment:
| Q |
129 |
ttttgttccaaaagggtccatttacttgaatccacatgcttttcaccagttaagttt |
185 |
Q |
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| T |
47729569 |
ttttgtcccaagagggtccatttacagaaatccatatgcttttcatcagttaagttt |
47729513 |
T |
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