View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_108 (Length: 325)
Name: NF10104A_low_108
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 31557023 - 31557330
Alignment:
| Q |
11 |
cacagacatcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaattt |
110 |
Q |
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| T |
31557023 |
cacagacatcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaattt |
31557122 |
T |
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| Q |
111 |
acaatgccccactttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaag |
210 |
Q |
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| T |
31557123 |
acaatgccccactttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaag |
31557222 |
T |
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| Q |
211 |
atgctcgcaccttcaatccatggagatggcaggtacatgattagnnnnnnnattattgctgatctaattaatgttatgttgagttacactgcactcttca |
310 |
Q |
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| T |
31557223 |
atgctcgcaccttcaatccatggagatggcaggtacatgattag-ttttttattattgctgatctaattaatgttatgttgagttacactacactcttca |
31557321 |
T |
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| Q |
311 |
gttgcttat |
319 |
Q |
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||||||||| |
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| T |
31557322 |
gttgcttat |
31557330 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 35478967 - 35479046
Alignment:
| Q |
166 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
245 |
Q |
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| T |
35478967 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
35479046 |
T |
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