View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_11 (Length: 486)

Name: NF10104A_low_11
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_11
NF10104A_low_11
[»] chr7 (12 HSPs)
chr7 (26-475)||(35938762-35939211)
chr7 (66-366)||(35981485-35981785)
chr7 (66-366)||(36002897-36003197)
chr7 (63-357)||(36221907-36222201)
chr7 (57-366)||(36217907-36218216)
chr7 (63-357)||(32727039-32727333)
chr7 (63-363)||(35957461-35957761)
chr7 (63-366)||(35976916-35977219)
chr7 (63-366)||(35998328-35998631)
chr7 (68-366)||(35946258-35946556)
chr7 (108-337)||(35951937-35952166)
chr7 (411-464)||(35957809-35957862)
[»] chr1 (2 HSPs)
chr1 (87-475)||(18117552-18117940)
chr1 (65-475)||(18125183-18125593)
[»] chr2 (1 HSPs)
chr2 (63-468)||(26328838-26329243)


Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 26 - 475
Target Start/End: Original strand, 35938762 - 35939211
Alignment:
Q  26 aagtttagcaatactgcatctataagtgcggaaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatca 125  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35938762 aagtttagcaatactgcatctataatcgcggaaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatca 35938861  T
Q  126 tagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttg 225  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35938862 tagcttaattttagtgcaggtaaaatatcattttgcttctgttctaaattccatatctcagaatctcttacaaattcccacttatttaaatcaaattttg 35938961  T
Q  226 aaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35938962 aaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttc 35939061  T
Q  326 ttcaccttccttaaatgctgatttgacaaacagagataaactgttctctttagaaaggccatgtaatagatacgagggaacagtgcccgtcattgaagca 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939062 ttcaccttccttaaatgctgatttgacaaacagagataaactgttctctttagaaaggccatgtaatagatacgagggaacagtgcccgtcattgaagca 35939161  T
Q  426 atcgatttactgcgtgttgtcacaatgattttgcatcctactgtgccaac 475  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35939162 atcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaac 35939211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 66 - 366
Target Start/End: Original strand, 35981485 - 35981785
Alignment:
Q  66 tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct 165  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||||||||||| || | |||    
T  35981485 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 35981584  T
Q  166 gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaac 265  Q
    | |||| |||||||| ||||||||| |||| |||| ||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  35981585 gctctagattccataactcagaatcccttacaaatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaac 35981684  T
Q  266 tccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaa 365  Q
    |||| ||||||||||||||||||| ||| | || | ||| |||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||    
T  35981685 tcctcgacattttttcacaatttcttttccgatatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaa 35981784  T
Q  366 c 366  Q
    |    
T  35981785 c 35981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 66 - 366
Target Start/End: Original strand, 36002897 - 36003197
Alignment:
Q  66 tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct 165  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||||||||||| || | |||    
T  36002897 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 36002996  T
Q  166 gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaac 265  Q
    | |||| |||||||| ||||||||| |||| |||| ||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  36002997 gctctagattccataactcagaatcccttacaaatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaac 36003096  T
Q  266 tccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaa 365  Q
    |||| ||||||||||||||||||| ||| | || | ||| |||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||    
T  36003097 tcctcgacattttttcacaatttcttttccgatatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaa 36003196  T
Q  366 c 366  Q
    |    
T  36003197 c 36003197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 63 - 357
Target Start/End: Complemental strand, 36222201 - 36221907
Alignment:
Q  63 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 162  Q
    |||||||||||||| | |||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||  || |     
T  36222201 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct 36222102  T
Q  163 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 262  Q
    | |||||||| ||||| ||||||   |||||||  |||  |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||    
T  36222101 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaaatcaaattttgataacagagaacttcctaatgttttgacagccagcgg 36222002  T
Q  263 aactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaaca 357  Q
    ||||||   |||||||||||||||||| ||| |||||| ||| ||||||| ||||||||||||||| || || ||||||||  |||| |||||||    
T  36222001 aactccagcacattttttcacaatttcttttccaatctccactagatttgaatatttttcttcttctccgtctttaaatgcccatttcacaaaca 36221907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 57 - 366
Target Start/End: Complemental strand, 36218216 - 36217907
Alignment:
Q  57 aaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcat 156  Q
    ||||| || ||||||||||| | ||||||| |||||||||| || ||||  || ||||| ||||||||||||||||||||||  ||||||||||||||||    
T  36218216 aaggtatagtctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcat 36218117  T
Q  157 tttgcatctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagc 256  Q
     || | |||||||||||||||||||||||   ||||||| ||||  |||||||| ||||||||||||||| ||||||||||||||||  ||| |||||||    
T  36218116 ctttcttctgttctaaattccatatctcatggtctcttacaaataaccacttatctaaatcaaattttgagaacagagaacttcctaccgttctcacagc 36218017  T
Q  257 cagtggaactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaac 356  Q
    ||| ||||||||   |||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||| || ||||| |||||  |||| ||||||    
T  36218016 cagcggaactccagcacattttttcacaatttcttttccaatctccactagatttggatatttttcttcttctccatccttgaatgcccatttcacaaac 36217917  T
Q  357 agagataaac 366  Q
    ||||| ||||    
T  36217916 agagacaaac 36217907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 63 - 357
Target Start/End: Original strand, 32727039 - 32727333
Alignment:
Q  63 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 162  Q
    |||||||||||||| ||||||||  |||||||||| |||||||| |||||||| ||||||||||||||||| || | ||||||||||||||||| || |     
T  32727039 taatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttct 32727138  T
Q  163 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 262  Q
    ||||||||||||||||||||||||||||||| | ||||  |||||||||||||||| ||||||| || |  ||||||| ||||||| ||||||  |||||    
T  32727139 tctgttctaaattccatatctcagaatctctcacaaatatccacttatttaaatcatattttgagaataaggaacttcgtaatgttctcacagaaagtgg 32727238  T
Q  263 aactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaaca 357  Q
    ||| |||  |||||||||||||||||| ||  |||| | ||| |||| |||||||||  || |||||||||||||||||||  ||||||||||||    
T  32727239 aacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaaca 32727333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 63 - 363
Target Start/End: Original strand, 35957461 - 35957761
Alignment:
Q  63 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 162  Q
    |||||||||||||| |||||||||||||||||||| || ||||  || ||||| ||||||||||| ||||||||||| |||||||||||||||||   |     
T  35957461 taatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatct 35957560  T
Q  163 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 262  Q
    | |||||||||||||| |||||||| || || | ||||||||||||| ||| |||||| ||||| || ||||||||| |||| ||| |||| || |||||    
T  35957561 tttgttctaaattccacatctcagagtccctaacaaattcccacttacttatatcaaagtttgagaagagagaacttgctaaagttctcacggctagtgg 35957660  T
Q  263 aactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagat 362  Q
    ||| ||||| ||||||||||||||||| ||| ||||||  ||  |||||||||| |||| |||||| |||||||| |||||  |||||||||||||||||    
T  35957661 aaccccttggcattttttcacaatttcttttccaatctctacttgatttggataatttttttcttcgccttccttgaatgcccatttgacaaacagagat 35957760  T
Q  363 a 363  Q
    |    
T  35957761 a 35957761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 63 - 366
Target Start/End: Original strand, 35976916 - 35977219
Alignment:
Q  63 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 162  Q
    |||||||||||||| ||||||| |||| ||||||| || ||||  || ||||| ||||||||||||||||||||||| |||||||||||| ||| || |     
T  35976916 taatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttct 35977015  T
Q  163 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 262  Q
    | |||||||||||||| |||||||| || || |  |||||||||||  ||| |||||| ||||| || |||||||||||||||||| ||||||| || ||    
T  35977016 tttgttctaaattccacatctcagagtccctaacgaattcccacttgcttatatcaaagtttgagaagagagaacttcctaatgttctcacagctagcgg 35977115  T
Q  263 aactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagat 362  Q
    ||| ||||| || ||||| |||||||| ||| | ||||  || |||||||||||||||| |||||| |||||||| || ||  |||||||||||||||||    
T  35977116 aaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgccttccttgaacgcccatttgacaaacagagat 35977215  T
Q  363 aaac 366  Q
    ||||    
T  35977216 aaac 35977219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 63 - 366
Target Start/End: Original strand, 35998328 - 35998631
Alignment:
Q  63 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 162  Q
    |||||||||||||| ||||||| |||| ||||||| || ||||  || ||||| ||||||||||||||||||||||| |||||||||||| ||| || |     
T  35998328 taatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttct 35998427  T
Q  163 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 262  Q
    | |||||||||||||| |||||||| || || |  |||||||||||  ||| |||||| ||||| || |||||||||||||||||| ||||||| || ||    
T  35998428 tttgttctaaattccacatctcagagtccctaacgaattcccacttgcttatatcaaagtttgagaagagagaacttcctaatgttctcacagctagcgg 35998527  T
Q  263 aactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagat 362  Q
    ||| ||||| || ||||| |||||||| ||| | ||||  || |||||||||||||||| |||||| |||||||| || ||  |||||||||||||||||    
T  35998528 aaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgccttccttgaacgcccatttgacaaacagagat 35998627  T
Q  363 aaac 366  Q
    ||||    
T  35998628 aaac 35998631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 35946258 - 35946556
Alignment:
Q  68 tttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgt 167  Q
    ||||||| | || ||||||||||||||||| || || |  || ||||| ||||||||||| ||||||||||| |||||||| ||||||| || | | |||    
T  35946258 tttgggaaaaagagaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgt 35946357  T
Q  168 tctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactc 267  Q
    ||||||||||| |||||||| || || |  |||||||||||| ||| |||||| ||||| || ||||||||| |||||||| |||| || |||||||| |    
T  35946358 tctaaattccacatctcagagtccctaacgaattcccacttacttatatcaaagtttgagaagagagaacttgctaatgttctcacggctagtggaaccc 35946457  T
Q  268 cttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaac 366  Q
    |||| ||||||||||||||||| ||| | |||   || ||||||||||| |||| ||||||||||||||| |||||  |||||||||||||||| ||||    
T  35946458 cttggcattttttcacaatttcttttcctatcgctactagatttggatactttttttcttcaccttccttgaatgcccatttgacaaacagagacaaac 35946556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 108 - 337
Target Start/End: Original strand, 35951937 - 35952166
Alignment:
Q  108 taggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcagaatctcttataaattcccact 207  Q
    |||||||  |||||||||||||||||||| || |||||||||||||||| || |   |||||||||||||| ||  |||| ||||| | |||||||||||    
T  35951937 taggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaaatagcagagtctctgacaaattcccact 35952036  T
Q  208 tatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttgcaatcttcacaag 307  Q
    || ||||||| || ||||| || || |||||||| |||| |||||||||||||||||| |||||||||||||||||| | || ||| ||||||  || ||    
T  35952037 tacttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaaccccttgacattttttcacagtatcttttccaatctctactag 35952136  T
Q  308 atttggatatttttcttcttcaccttcctt 337  Q
    |||||||||||||| |||||| || |||||    
T  35952137 atttggatattttttttcttcgccatcctt 35952166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 35957809 - 35957862
Alignment:
Q  411 cccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcatcct 464  Q
    ||| ||||||||||||| || ||||||||||||||||| || ||||||| ||||    
T  35957809 cccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcct 35957862  T

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Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 87 - 475
Target Start/End: Original strand, 18117552 - 18117940
Alignment:
Q  87 taagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcag 186  Q
    |||||||| |||||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||    
T  18117552 taagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttttgttctaaagtccacatctcag 18117651  T
Q  187 aatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaat 286  Q
    | ||||||  || |||||| ||||||||||||||||||||||||||| | |||||||||||| ||||  | |||||||| ||    ||||| ||||||||    
T  18117652 agtctcttgcaagttcccatttatttaaatcaaattttgaaaacagacagcttcctaatgttctcacgacgagtggaacccccgcgcatttcttcacaat 18117751  T
Q  287 ttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaactgttctctttagaaaggcca 386  Q
    ||| ||| | ||||  || |||||||||||||| |||||||| |||||||| |||||  |||| ||||||| |||||||| ||| ||  ||||||||||     
T  18117752 ttcttttcctatctcaactagatttggatatttgtcttcttcgccttccttgaatgcccatttcacaaacaaagataaacagttttcaatagaaaggcct 18117851  T
Q  387 tgtaatagatacgagggaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcatcctactgtgccaac 475  Q
    | ||| | ||| ||||||||||| ||| |||| || ||||| || || |||||||||||| | |||| ||||| |||||||||||||||    
T  18117852 tttaaaacataggagggaacagtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaac 18117940  T

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Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 65 - 475
Target Start/End: Original strand, 18125183 - 18125593
Alignment:
Q  65 atctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatc 164  Q
    |||||| ||||| ||||| ||||||||||| || ||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||| ||    |    
T  18125183 atctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctttttgc 18125282  T
Q  165 tgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaa 264  Q
    |||| ||||||||| | |||||||||||||| ||||  |||  ||||||||||||||||||| || || ||||||||||||||| | ||||| |||||||    
T  18125283 tgttttaaattccacagctcagaatctcttacaaatatccatgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctagtggaa 18125382  T
Q  265 ctccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataa 364  Q
    | ||||| |||||||||||||| || ||| | ||||  || ||||||||||||||||||||||| |||||||| |||||  |||||||||| ||||||||    
T  18125383 ccccttggcattttttcacaatctcttttcctatctctactagatttggatatttttcttcttcgccttccttgaatgcccatttgacaaatagagataa 18125482  T
Q  365 actgttctctttagaaaggccatgtaatagatacgagggaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcatcct 464  Q
    ||  | ||    |||||| || || || | ||| ||||||||| | ||| |||| |||||||| || ||| | ||||||||||| || ||||||| ||||    
T  18125483 acaatccttcaaagaaagaccttgcaaaacatatgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttcct 18125582  T
Q  465 actgtgccaac 475  Q
      |||||||||    
T  18125583 cttgtgccaac 18125593  T

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Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 63 - 468
Target Start/End: Complemental strand, 26329243 - 26328838
Alignment:
Q  63 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 162  Q
    |||||||||||| | |||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || ||  ||||||||||||||| ||       
T  26329243 taatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcatctttgt 26329144  T
Q  163 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtgg 262  Q
    | ||   |||||||||||| |  || || || |  || | |||||||| ||||||||||||||| || || ||||||||||| |||||||| || | |||    
T  26329143 tttgccttaaattccatatttgggagtccctgacgaacttccacttatctaaatcaaattttgagaagagtgaacttcctaacgttttcactgctaatgg 26329044  T
Q  263 aactccttgacattttttcacaatttcctttgcaatcttcacaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagat 362  Q
    ||  ||| | ||||||||| | || || ||| |||||| |   |||| |||||| ||| ||||||| ||||||||||||||  |||||||||| |||||     
T  26329043 aatccctcggcattttttcgctatatcttttccaatctccgatagatgtggatactttacttcttctccttccttaaatgcccatttgacaaagagagac 26328944  T
Q  363 aaactgttctctttagaaaggccatgtaatagatacgagggaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcatc 462  Q
    ||||  || ||   |||||| || | |||   ||||  |||||| || ||| |||| ||||||||| | ||||| ||||||||||| | |||||||| |     
T  26328943 aaacaattatccaaagaaagaccttttaaagtatacatgggaaccgttcccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgcttt 26328844  T
Q  463 ctactg 468  Q
    ||||||    
T  26328843 ctactg 26328838  T

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