View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_110 (Length: 324)
Name: NF10104A_low_110
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_110 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 315
Target Start/End: Complemental strand, 2466930 - 2466642
Alignment:
| Q |
6 |
acattattttattatactccaataatacgagaaatgtcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat |
105 |
Q |
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| T |
2466930 |
acattattttattatactccaataatatgagaaatatcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat |
2466831 |
T |
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| Q |
106 |
ttatttatttatttatccatcatatggtatggtttctatatatagcttaaattgaaacattctattaagcatgcacttagtatggcttttcaccaacata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| | |
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| T |
2466830 |
ttatttatttatttatccatcatatggtatggtttcta--tatagcttaaagtgaaa----------------cacttagtatggcttttcaccaa---a |
2466752 |
T |
|
| Q |
206 |
gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatcgcactttggcacatccaacacgttgtgagtttctccaaacaacc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466751 |
gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc |
2466652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 59 - 315
Target Start/End: Complemental strand, 2462832 - 2462594
Alignment:
| Q |
59 |
atataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatatatagcttaaatt |
158 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
2462832 |
atataatgagtcaagaactcattacgtacatacgtttaccctgcaatttatttatttatttatccatcatatggtatggtttctatata--gcttaaagt |
2462735 |
T |
|
| Q |
159 |
gaaacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac |
258 |
Q |
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| T |
2462734 |
gaaaca----------------cttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac |
2462651 |
T |
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| Q |
259 |
atcgcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataat |
315 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2462650 |
atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataat |
2462594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 186 - 315
Target Start/End: Original strand, 3063274 - 3063403
Alignment:
| Q |
186 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatcgcactttggcacatccaacacgtt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
|
| Q |
286 |
gtgagtttctccaaacaacctgagtataat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
3063374 |
gtgagtttctccaaacaacctgagtataat |
3063403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 2458154 - 2458018
Alignment:
| Q |
176 |
atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatcgcactttggcacat |
275 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| ||||| |||||||||||| |
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| T |
2458154 |
atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacat |
2458058 |
T |
|
| Q |
276 |
ccaacacgttgtgagtttctccaaacaacctgagtataat |
315 |
Q |
| |
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|||| ||| | || ||||||||||||||||||||| |||| |
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| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaat |
2458018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 2470100 - 2469972
Alignment:
| Q |
179 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatcgcactttggcacatcca |
278 |
Q |
| |
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|||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatt---acatttcactttggcacatcca |
2470004 |
T |
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| Q |
279 |
acacgttgtgagtttctccaaacaacctgagt |
310 |
Q |
| |
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| ||||||| |||||||||||| |||||||| |
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| T |
2470003 |
atccgttgtgtgtttctccaaaccacctgagt |
2469972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 2474368 - 2474238
Alignment:
| Q |
182 |
ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatcgcactttggcacatccaaca |
281 |
Q |
| |
|
||||||||| |||| |||| ||||||||| || |||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| | |
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| T |
2474368 |
ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaata |
2474272 |
T |
|
| Q |
282 |
cgttgtgagtttctccaaacaacctgagtataat |
315 |
Q |
| |
|
|||| || |||||||||||| ||||||||||||| |
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| T |
2474271 |
cgttttgtgtttctccaaaccacctgagtataat |
2474238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
| Q |
213 |
ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatcgcactttggcacatccaacacgttgtga |
289 |
Q |
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|||||||| |||||||| ||||||||||| |||| ||||| |||||| ||||||| ||||||||||||||||||| |
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| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga |
2471017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 2486576 - 2486512
Alignment:
| Q |
251 |
attatcacatcgcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataat |
315 |
Q |
| |
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|||||||||| ||||||| |||||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
2486576 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataat |
2486512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 18016046 - 18015917
Alignment:
| Q |
186 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatcgcactttggcacatccaacacgtt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
|
| Q |
286 |
gtgagtttctccaaacaacctgagtataat |
315 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
18015946 |
gtgagtttctccaaacaacctgagtataat |
18015917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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