View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_113 (Length: 321)
Name: NF10104A_low_113
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_113 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 30049387 - 30049719
Alignment:
| Q |
7 |
aaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049387 |
aaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaag |
30049486 |
T |
|
| Q |
107 |
caagctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgctt |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049487 |
caagctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgctt |
30049586 |
T |
|
| Q |
207 |
atgtgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30049587 |
atgtgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatc |
30049686 |
T |
|
| Q |
284 |
agctaagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30049687 |
agctaagcataggctgagtcattacttagtatt |
30049719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 7162342 - 7162671
Alignment:
| Q |
9 |
aatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagca |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7162342 |
aatggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaaaaaaggcacttgctagtgccaagttcatggagctaagaagca |
7162441 |
T |
|
| Q |
109 |
agctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttat |
208 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162442 |
agctgggagtattccagaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttat |
7162541 |
T |
|
| Q |
209 |
gtgtgtaattattttaacttgttttgttagtaagattat-ctgcac---------------------aagttaagtaggtttatgtcatatgacatcagc |
286 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| | ||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
7162542 |
gtgtgtaatcattttaacttattttgttagtaaaactatgctgcacaagtaataaggttatctgcacaagttaagcaggtttatgtcatatgacatcagc |
7162641 |
T |
|
| Q |
287 |
taagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
7162642 |
taagcataggctgagtcattactaagtatt |
7162671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 144 - 316
Target Start/End: Original strand, 30045121 - 30045316
Alignment:
| Q |
144 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt------- |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045121 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa |
30045220 |
T |
|
| Q |
237 |
------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagctaagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045221 |
ctatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatt |
30045316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 3945641 - 3945973
Alignment:
| Q |
7 |
aaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945641 |
aaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaag |
3945740 |
T |
|
| Q |
107 |
caagctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgctt |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945741 |
caagctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgctt |
3945840 |
T |
|
| Q |
207 |
atgtgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3945841 |
atgtgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatc |
3945940 |
T |
|
| Q |
284 |
agctaagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3945941 |
agctaagcataggctgagtcattacttagtatt |
3945973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 142 - 316
Target Start/End: Original strand, 3941377 - 3941574
Alignment:
| Q |
142 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt----- |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941377 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa |
3941476 |
T |
|
| Q |
237 |
--------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagctaagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941477 |
aactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatt |
3941574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 22365271 - 22365597
Alignment:
| Q |
9 |
aatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagca |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365271 |
aatggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagca |
22365370 |
T |
|
| Q |
109 |
agctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttat |
208 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365371 |
agctgggagtattccagataagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttat |
22365470 |
T |
|
| Q |
209 |
gtgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaa |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22365471 |
gtgtgtaattattttaacttgttttgttagtaaaactatgctgcataagtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcaactaa |
22365570 |
T |
|
| Q |
290 |
gcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
22365571 |
gcataggctgagtcattactaagtatt |
22365597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 144 - 316
Target Start/End: Original strand, 22361019 - 22361210
Alignment:
| Q |
144 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt------- |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361019 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaag |
22361118 |
T |
|
| Q |
237 |
------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22361119 |
ctatgctgcacaagtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagtatt |
22361210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 23397404 - 23397337
Alignment:
| Q |
163 |
aaaacttttctgaatactttattgtttatgttactttattgctta--tgtgtgtaattattttaactt |
228 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
23397404 |
aaaacttttctgaatatttcgttgttaatgttactttattgcctatgtgtgtgtaatgattttaactt |
23397337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 39949789 - 39949463
Alignment:
| Q |
7 |
aaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949789 |
aaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaag |
39949690 |
T |
|
| Q |
107 |
caagctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgctt |
206 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39949689 |
caagctgggagtattccagaaaagttttaaggaggagtgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgctt |
39949590 |
T |
|
| Q |
207 |
atgtgtgtaattattttaacttgttttgttagtaagattat-ctgca----------------caagttaagtaggtttatgtcatatgacatcagctaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949589 |
atgtgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatatgacatcagctaa |
39949490 |
T |
|
| Q |
290 |
gcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
|||||||||||| |||||| |||||| |
|
|
| T |
39949489 |
acataggctgagttattactaagtatt |
39949463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 39954045 - 39953855
Alignment:
| Q |
143 |
gtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaag |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954045 |
gtgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaa |
39953946 |
T |
|
| Q |
243 |
attat-ctgca----------------caagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
39953945 |
actatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatatgacatcagctaaacatagactgagttattactaagtatt |
39953855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 196628 - 196311
Alignment:
| Q |
7 |
aaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196628 |
aaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaag |
196529 |
T |
|
| Q |
107 |
caagctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgctt |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
196528 |
caagctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaa-----------ttatgttactttattgttt |
196440 |
T |
|
| Q |
207 |
atgtgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagct |
287 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
196439 |
atgtgtgtaatcattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcacgagttaagtaggtttacgtcatatgacatcagct |
196340 |
T |
|
| Q |
288 |
aagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
196339 |
aagcataggctgagtcattactaagtatt |
196311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 316
Target Start/End: Complemental strand, 200872 - 200690
Alignment:
| Q |
142 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
200872 |
agtgttgactaattgacctataaaacttttctgaat-----------tatgttactttattgtttatgtgtgtaatcattttaacttgttttgttagtaa |
200784 |
T |
|
| Q |
242 |
ga-------------------ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
200783 |
aactatgctgcacaagtaaggttatctgcacaagttaagtaggtttacctcatatgacatcagctaagcataggctgagtcattactaagtatt |
200690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 144 - 316
Target Start/End: Original strand, 1330569 - 1330760
Alignment:
| Q |
144 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga |
243 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
1330569 |
tgttgactaattgacctataaaacttgtctgaatactttattgtttatgttactctattgcttatgtgtgtaatcattttaacttgttttgttagtaaaa |
1330668 |
T |
|
| Q |
244 |
-------------------ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | |||||| |
|
|
| T |
1330669 |
ctatactgcacaagtaatgttatctgcacaagttaagtaggtttatgtcatatgacatcagcaaagtataggttgagtcattagtaagtatt |
1330760 |
T |
|
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