View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_114 (Length: 321)
Name: NF10104A_low_114
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_114 |
 | |
|
| [»] chr6 (20 HSPs) |
| |
|
| [»] scaffold0041 (1 HSPs) |
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|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 10579780 - 10580101
Alignment:
| Q |
1 |
atatacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtatt-actgaaaaactgtaaaagggtcacaaagaa |
99 |
Q |
| |
|
|||||||||||| ||||||||||| || ||| |||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
10579780 |
atatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaactatttactgaaaaactgtaaaagggtcacaaagaa |
10579879 |
T |
|
| Q |
100 |
gggagttaaacatgtggtagaaaactgcacacaacttagagggatttacttggatgatttagatttaaggaggataaataggggattcttcttgcgtcat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10579880 |
gggagttaaacatgtggtagaaaactgcacacaacttagagagatttacttggatgatttagatttaaggaggataaataggggattcttcttgcgtcat |
10579979 |
T |
|
| Q |
200 |
ggatgcgttctttgctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgttataatatagcatatatgacagaaacagcagtt |
299 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10579980 |
ggatgccttctttgctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgttataatatagcatatatgacagaaacagcagtt |
10580079 |
T |
|
| Q |
300 |
tcaatttagggagtggtgctga |
321 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10580080 |
tcaatttagggagtggtgctga |
10580101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 267
Target Start/End: Original strand, 6597042 - 6597208
Alignment:
| Q |
107 |
aaacatgtggtagaaaactgcacacaacttagagggatttacttggatgatttagatt------taaggaggataaataggggattcttcttgcgtcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||| |||| ||||| |||| ||||||||||||||||| |
|
|
| T |
6597042 |
aaacatgtggtagaaaactgcacaaaacttagagaaatttatttgggtgatttagattcagatttaagtgagataagtaggaaattcttcttgcgtcatg |
6597141 |
T |
|
| Q |
201 |
gatgcgttctttgctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgtt |
267 |
Q |
| |
|
||||| ||||||||| || ||||||||||||| ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
6597142 |
gatgccttctttgctggttatctaaaaatgctatgctcaagtttgaactctgtcagttgtttttgtt |
6597208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 19632461 - 19632228
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||||| ||| | ||||| |||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
19632461 |
gatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggtagaaaactgcaaacaa |
19632362 |
T |
|
| Q |
134 |
cttagagggatttacttggatgatttagatttaaggaggataaataggggattcttcttgcgtcatggatgcgttctttgctagtattctaaaaatgcta |
233 |
Q |
| |
|
|| | | |||||| |||| ||| | ||| ||| | || |||| | ||| |||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
19632361 |
ctgaaggagatttatttgggggatattcattcaagtgacaaaactaggaaactctgcttgcgtcatggatgccttctttgctagtattccgaaaatgcta |
19632262 |
T |
|
| Q |
234 |
cgctgaagtttgaactctgtaagttgtttttgtt |
267 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
19632261 |
ttatgaagtttgaaccctgtaagttgtttttgtt |
19632228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 6394906 - 6394653
Alignment:
| Q |
14 |
gatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatg |
113 |
Q |
| |
|
|||||| ||||||| | || |||||||||||||||||||||||||||| || || ||| | || ||||||| |||||| | ||||| || |||||| |
|
|
| T |
6394906 |
gatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacagaaaagggtgtggaacatg |
6394807 |
T |
|
| Q |
114 |
tggtagaaaactgcacacaacttagagggatttacttggatgatttagatttaag-gaggataaataggggattcttcttgcgtcatggatgcgttcttt |
212 |
Q |
| |
|
|||||||||||||||||||| | |||| |||| | |||| ||| | ||| |||| || || |||||||| | | | ||||||| ||||||| | ||| |
|
|
| T |
6394806 |
tggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacga-aaatagggaacttctattgcgtcgtggatgccgtattt |
6394708 |
T |
|
| Q |
213 |
gctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgtt |
267 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
6394707 |
gctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtt |
6394653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 6426553 - 6426432
Alignment:
| Q |
14 |
gatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatg |
113 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||||||| || ||||| || ||||||| |||| |||||| | ||||||| |||||| || ||||| | |
|
|
| T |
6426553 |
gatgatgaaactttttatgcgatctcaaagaattgttgtcggattttgcaattattacttgaaaattgtaaaggtgtcacaatgaagggtgtgaaacaag |
6426454 |
T |
|
| Q |
114 |
tggtagaaaactgcacacaact |
135 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6426453 |
tggtagaaaactgcacacaact |
6426432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 6402902 - 6402769
Alignment:
| Q |
14 |
gatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatg |
113 |
Q |
| |
|
|||||| |||| || |||| |||||||||||||||| |||||||||||||| ||||| ||| | | ||| | | |||||| | ||||||| ||||||| |
|
|
| T |
6402902 |
gatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgagagattgttataatgtcacagaaaagggagcgaaacatg |
6402803 |
T |
|
| Q |
114 |
tggtagaaaactgcacacaacttagagggattta |
147 |
Q |
| |
|
|| |||||||||| |||||||| |||| |||||| |
|
|
| T |
6402802 |
tgatagaaaactgtacacaactgagagagattta |
6402769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 6585283 - 6585415
Alignment:
| Q |
3 |
atacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaaggg |
102 |
Q |
| |
|
||||||| || |||||| |||| || |||| ||||||||||| ||||| || ||||||| || ||||||||||| ||| ||| |||||| ||||||| |
|
|
| T |
6585283 |
atacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacagagaaggg |
6585382 |
T |
|
| Q |
103 |
agttaaacatgtggtagaaaactgcacacaact |
135 |
Q |
| |
|
| | |||||||||||||||| ||||||||||| |
|
|
| T |
6585383 |
actgaaacatgtggtagaaatttgcacacaact |
6585415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 6410048 - 6409932
Alignment:
| Q |
14 |
gatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatg |
113 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||| |||||||| || |||| || | |||||| | | |||||| |||||||||| ||||||| |
|
|
| T |
6410048 |
gatgatgaaactctttatgtgatctcaaagaattgttgtcggcttttgcaactatttttgtacaactgtgataatgtcacacagaagggagtgaaacatg |
6409949 |
T |
|
| Q |
114 |
tggtagaaaactgcaca |
130 |
Q |
| |
|
||| | |||| |||||| |
|
|
| T |
6409948 |
tggcaaaaaaatgcaca |
6409932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 6432203 - 6432084
Alignment:
| Q |
14 |
gatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatg |
113 |
Q |
| |
|
|||||| |||| || |||| ||||| ||||||||||||||||||| || || |||| ||| | || ||| | | |||||| |||||||||| |||| || |
|
|
| T |
6432203 |
gatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgtacaattgtgataatgtcacacagaagggagtgaaacttg |
6432104 |
T |
|
| Q |
114 |
tggtagaaaactgcacacaa |
133 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
6432103 |
tggtagaaaaatgcacacaa |
6432084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 6589465 - 6589640
Alignment:
| Q |
99 |
agggagttaaacatgtggtagaaaactgcacacaacttagagggatttacttggatgatttagatttaaggaggataaataggggattcttcttgcgtca |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| || |||||| ||| ||| | ||||||| | || ||||| | |||||| | ||| |
|
|
| T |
6589465 |
agggagtgaaacatgtggtagaaaactgcacacgacttcaagagatttatctgggggatattcatttaagtgacaaaactagggaaatcttctcccatca |
6589564 |
T |
|
| Q |
199 |
tggatgcgttctttgctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgttataatat |
274 |
Q |
| |
|
||||||| ||||| |||||||||| ||| |||| ||| |||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
6589565 |
tggatgccatctttactagtattctgaaattgctgtgctaaagtatgaacactgtaagttgtttttgttttaatat |
6589640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 14820715 - 14820604
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||||| |||| ||||| |||||| ||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
14820715 |
gatctccaagaattgttgtgggcttttgcgattattacttgaaaaatgtaatgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacag |
14820616 |
T |
|
| Q |
134 |
cttagagggatt |
145 |
Q |
| |
|
|| |||| |||| |
|
|
| T |
14820615 |
ctgagagagatt |
14820604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 6423256 - 6423010
Alignment:
| Q |
17 |
gataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtgg |
116 |
Q |
| |
|
|||||||| || |||||||||||||||| |||||||||| ||||| || ||||||| || | ||| | || ||||| || ||| | |||| ||||| |
|
|
| T |
6423256 |
gataaaacactctatgcgatctcaaagagttgttgtgggattttgcaactattacttgaagattgtgattatgtaacaaacaaaggactgaaacgtgtgg |
6423157 |
T |
|
| Q |
117 |
tagaaaactgcacacaacttagagggatttacttggatgatttagatttaaggaggataaataggggattcttcttgcgtcatggatgcgttctttgcta |
216 |
Q |
| |
|
|| ||||||||||||| | |||| |||||| |||| ||||| || |||| | ||||| | | || ||||| || ||||||| |||||||||| |
|
|
| T |
6423156 |
tattaaactgcacacaattgagagagatttatttgggagattttcatgtaagtgacaaaaataagaaactcatcttggatcgtggatgccttctttgcta |
6423057 |
T |
|
| Q |
217 |
gtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttt |
263 |
Q |
| |
|
||||||| ||| | ||| ||| |||||||||| |||||||||||||| |
|
|
| T |
6423056 |
gtattctgaaatttctatgctaaagtttgaacactgtaagttgtttt |
6423010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 6603274 - 6603380
Alignment:
| Q |
29 |
tatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgca |
128 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| || ||||| ||||| | ||| | |||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
6603274 |
tatgcgatctcaaagagttgtcctgggcttttggaactattattgaaatattgttattatgtcacagagaaaggagtgaaacatgtggtagaaaactgca |
6603373 |
T |
|
| Q |
129 |
cacaact |
135 |
Q |
| |
|
|||||| |
|
|
| T |
6603374 |
aacaact |
6603380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 14818404 - 14818306
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacaca |
132 |
Q |
| |
|
|||||| |||||||||| |||||||||| | ||||||| |||| ||||| | |||||| ||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
14818404 |
gatctccaagaattgttctgggcttttgcgattattacttgaaaattgtaataatgtcacagagaagggtgtgaaacatgtagtagaaaactgcacaca |
14818306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 6416007 - 6415882
Alignment:
| Q |
15 |
atgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgt |
114 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| | ||||||||| || ||||||| || ||| | | |||||| | |||||| |||||||| |
|
|
| T |
6416007 |
atgataaaactctctatgtgatctcaaagaattgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgt |
6415908 |
T |
|
| Q |
115 |
ggtagaaaactgcacacaacttagag |
140 |
Q |
| |
|
|||||| |||||||||||||| |||| |
|
|
| T |
6415907 |
ggtagagaactgcacacaactaagag |
6415882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 14820541 - 14820482
Alignment:
| Q |
208 |
tctttgctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgtt |
267 |
Q |
| |
|
|||||||||||||| | ||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
14820541 |
tctttgctagtattatgaaattgcgttgctgaagtttgaacactgtaagttgtttttgtt |
14820482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 7994246 - 7994360
Alignment:
| Q |
21 |
aaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtaga |
120 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||| |||||| || ||||||| || ||||| || || || ||||||| |||||||||||||| |
|
|
| T |
7994246 |
aaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgtaatgatgttaccgaggagggagtgaaacatgtggtaga |
7994345 |
T |
|
| Q |
121 |
aaactgcacacaact |
135 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
7994346 |
aaactgcacgcaact |
7994360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 28935013 - 28934947
Alignment:
| Q |
92 |
acaaagaagggagttaaacatgtggtagaaaactgcacacaacttagagggatttacttggatgatt |
158 |
Q |
| |
|
||||| || ||||| || |||||||||||||| ||||||||||| |||| ||| || |||||||||| |
|
|
| T |
28935013 |
acaaaaaaaggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgatt |
28934947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 14802389 - 14802329
Alignment:
| Q |
3 |
atacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaa |
63 |
Q |
| |
|
||||||| || |||||| |||| || |||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
14802389 |
atacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttgaa |
14802329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 14818236 - 14818204
Alignment:
| Q |
235 |
gctgaagtttgaactctgtaagttgtttttgtt |
267 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
14818236 |
gctgaagtttgaacactgtaagttgtttttgtt |
14818204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 51764487 - 51764616
Alignment:
| Q |
4 |
tacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaaggga |
103 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||| || |||||||| || | ||| | | |||| |||||||| |
|
|
| T |
51764487 |
tacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaaggga |
51764586 |
T |
|
| Q |
104 |
gttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
|| ||||||||||| ||||||||||||||| |
|
|
| T |
51764587 |
gtgaaacatgtggttgaaaactgcacacaa |
51764616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 51113838 - 51113969
Alignment:
| Q |
14 |
gatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatg |
113 |
Q |
| |
|
|||||| |||| || |||| |||||| |||| |||||||||||||||| || | ||||||||||| ||| | |||||| |||||||||| || |||| |
|
|
| T |
51113838 |
gatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatg |
51113937 |
T |
|
| Q |
114 |
tggtagaaaactgcacacaacttagagggatt |
145 |
Q |
| |
|
|||||||||| |||||| |||| |||| |||| |
|
|
| T |
51113938 |
tggtagaaaaatgcacaaaactaagagagatt |
51113969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 13470790 - 13470907
Alignment:
| Q |
15 |
atgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgt |
114 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||||| || ||||||| || ||| | | |||||| | ||||||| |||||||| |
|
|
| T |
13470790 |
atgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgtcataatgtcacagaagagggagtgaaacatgt |
13470889 |
T |
|
| Q |
115 |
ggtagaaaactgcacaca |
132 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
13470890 |
ggtagagaactgcacaca |
13470907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 514805 - 514911
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
|||||| |||| ||| |||||||||||| || |||||||| |||| ||| || | ||||| ||| |||||| || |||||||| |||||||||||| | |
|
|
| T |
514805 |
gatctcgaagagttgctgtgggcttttgcaactattactgcaaaattgtgaaggtatcacagagacgggagtgaagcatgtggtgaaaaactgcacacga |
514904 |
T |
|
| Q |
134 |
cttagag |
140 |
Q |
| |
|
|| |||| |
|
|
| T |
514905 |
ctgagag |
514911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 51121037 - 51121069
Alignment:
| Q |
101 |
ggagttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
51121037 |
ggagtgaaacatgtggtagaaaactgcacacaa |
51121069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 32267497 - 32267392
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | | ||| ||||| ||||| |||||||||||||||| || ||||| |||||||||||||| ||| |
|
|
| T |
32267497 |
gatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagcatgtagtagaaaactgcacgcaa |
32267398 |
T |
|
| Q |
134 |
cttaga |
139 |
Q |
| |
|
|||||| |
|
|
| T |
32267397 |
cttaga |
32267392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 20478126 - 20478265
Alignment:
| Q |
1 |
atatacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaag |
100 |
Q |
| |
|
||||||||| || ||||| |||| ||| || |||||||| ||||||||||||||||||| || || |||||||||| || | | ||||||| ||| |
|
|
| T |
20478126 |
atatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaaatactactgaaaaattgcgataatgtcacaatgaaa |
20478225 |
T |
|
| Q |
101 |
ggagttaaacatgtggtagaaaactgcacacaacttagag |
140 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
20478226 |
ggagcgaaacatgtcgtagaaaactgcacacaactgagag |
20478265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 41889598 - 41889717
Alignment:
| Q |
1 |
atatacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaag |
100 |
Q |
| |
|
|||||||||||| |||||| |||| || ||| ||||||||||| |||||| ||||||| |||| | ||||| ||||| ||| | |||||||||||| |
|
|
| T |
41889598 |
atatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaag |
41889697 |
T |
|
| Q |
101 |
ggagttaaacatgtggtaga |
120 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
41889698 |
ggagtgaatcatgtggtaga |
41889717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 41901579 - 41901704
Alignment:
| Q |
1 |
atatacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaag |
100 |
Q |
| |
|
|||||||||||| |||||| || | || ||| ||||||||||| ||||||||| ||||||||| | | ||| || | ||||| |||||||||||| |
|
|
| T |
41901579 |
atatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtcacttcaagattgtaatgatgtcacaaagaag |
41901678 |
T |
|
| Q |
101 |
ggagttaaacatgtggtagaaaactg |
126 |
Q |
| |
|
||||| || ||||||||||||||||| |
|
|
| T |
41901679 |
ggagtgaagcatgtggtagaaaactg |
41901704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 15092209 - 15092461
Alignment:
| Q |
15 |
atgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgt |
114 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||| || ||||||| || ||| | | |||||| | |||||| |||||||| |
|
|
| T |
15092209 |
atgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgt |
15092308 |
T |
|
| Q |
115 |
ggtagaaaactgcacacaacttagagggatttacttggatgatttagatttaaggaggataaataggggattcttcttgcgtcatggatgcgttctttgc |
214 |
Q |
| |
|
| ||||||||||||||||| | |||| |||| | ||| || | || |||| | || |||| | | |||| ||||| ||||||| | ||||| |
|
|
| T |
15092309 |
gctagaaaactgcacacaattgagagagattaatttgcggtatatccatgtaagtgacaaaactaggaaactattctcgcgtcgtggatgccatatttgc |
15092408 |
T |
|
| Q |
215 |
tagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgtt |
267 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
15092409 |
tagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtt |
15092461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 45245162 - 45245265
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
||||||||||| |||| ||||||||||| || ||||| ||||||| ||| | |||||| | |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
45245162 |
gatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaa |
45245261 |
T |
|
| Q |
134 |
ctta |
137 |
Q |
| |
|
|||| |
|
|
| T |
45245262 |
ctta |
45245265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 27922563 - 27922429
Alignment:
| Q |
1 |
atatacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaag |
100 |
Q |
| |
|
||||||||| || |||||| || | || ||| ||||||||||| ||||||||||||||||||| | | ||| |||| ||||| ||||||||||| |
|
|
| T |
27922563 |
atatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattgtaatgatttcacaaagaag |
27922464 |
T |
|
| Q |
101 |
ggagttaaacatgtggtagaaaactgcacacaact |
135 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| |
|
|
| T |
27922463 |
ggagtgaaccatgtggtagaaaactgcactcaact |
27922429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34936207 - 34936278
Alignment:
| Q |
1 |
atatacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattact |
72 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||| ||| |||||| |||| ||||||||||| || ||||||| |
|
|
| T |
34936207 |
atatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaactattact |
34936278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 17628091 - 17628189
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacaca |
132 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||| || |||||| | |||||| | |||||||| || |||||| | ||||||||||||| |
|
|
| T |
17628091 |
gatctcaaagaattgttttgggctcttgaaactattactagaattttgtaaaggtgtcacagacaagggagtgaagcatgtgttgaaaaactgcacaca |
17628189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 370942 - 370842
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
||||||||||| ||||||| |||||||| || |||||||| |||| ||| || | ||||||||| |||||| || |||||||| |||||||||||||| |
|
|
| T |
370942 |
gatctcaaagagttgttgtcggcttttgcaactattactgcaaaattgtgaaggtatcacaaagatgggagtgaagcatgtggtgaaaaactgcacacaa |
370843 |
T |
|
| Q |
134 |
c |
134 |
Q |
| |
|
| |
|
|
| T |
370842 |
c |
370842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 8184076 - 8184208
Alignment:
| Q |
3 |
atacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaaggg |
102 |
Q |
| |
|
|||||| ||| ||||||| | | || ||||| |||||||||| |||||||||||||||| || | |||||| |||| ||| ||| | ||||| | |||| |
|
|
| T |
8184076 |
atacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggcttttggaactgttactggaaaattgtgaaatgatcacagatgaggg |
8184175 |
T |
|
| Q |
103 |
agttaaacatgtggtagaaaactgcacacaact |
135 |
Q |
| |
|
||| || |||||| ||||||| ||||||||||| |
|
|
| T |
8184176 |
agtgaagcatgtgctagaaaattgcacacaact |
8184208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 546954 - 546829
Alignment:
| Q |
15 |
atgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgt |
114 |
Q |
| |
|
||||| |||| || |||| ||||||||||| |||||||||||||||| || | |||||| || | ||| |||||| |||||||||| |||||||| |
|
|
| T |
546954 |
atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgt |
546855 |
T |
|
| Q |
115 |
ggtagaaaactgcacacaacttagag |
140 |
Q |
| |
|
| |||||||||||||| |||| |||| |
|
|
| T |
546854 |
gctagaaaactgcacaaaactaagag |
546829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 53761847 - 53761947
Alignment:
| Q |
34 |
gatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaa |
133 |
Q |
| |
|
|||||| ||||||||| ||||||||||| || ||||||||||| | ||| | | ||||| | |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
53761847 |
gatctcgaagaattgtcgtgggcttttgcaa-tattactgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcacacaa |
53761945 |
T |
|
| Q |
134 |
ct |
135 |
Q |
| |
|
|| |
|
|
| T |
53761946 |
ct |
53761947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 1517574 - 1517674
Alignment:
| Q |
35 |
atctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaac |
134 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||||||| |||| ||| | |||||| |||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
1517574 |
atctcaaagaattgtcgtggaattttgaaactattactggaaaattgtcatgatgtcacagagaagggagttaggcatgtggtagagaactgtgcacaac |
1517673 |
T |
|
| Q |
135 |
t |
135 |
Q |
| |
|
| |
|
|
| T |
1517674 |
t |
1517674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 553434 - 553395
Alignment:
| Q |
101 |
ggagttaaacatgtggtagaaaactgcacacaacttagag |
140 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
553434 |
ggagtgaatcatgtggtagaaaactgcacacaacttagag |
553395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 55505237 - 55505288
Alignment:
| Q |
89 |
gtcacaaagaagggagttaaacatgtggtagaaaactgcacacaacttagag |
140 |
Q |
| |
|
|||||| |||||||||| ||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
55505237 |
gtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagag |
55505288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 8187137 - 8187195
Alignment:
| Q |
3 |
atacaaaagtcgatgataaaactctatatgcgatctcaaagaattgttgtgggcttttg |
61 |
Q |
| |
|
|||||| ||| ||||||||||| || ||||| || ||||||| |||||||||||||||| |
|
|
| T |
8187137 |
atacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggcttttg |
8187195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 640879 - 640843
Alignment:
| Q |
92 |
acaaagaagggagttaaacatgtggtagaaaactgca |
128 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
|
|
| T |
640879 |
acaaagaagggagtgaatcatgtggtagaaaactgca |
640843 |
T |
|
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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 39225 - 39095
Alignment:
| Q |
15 |
atgataaaactctatatgcgatctcaaagaattgttgtgggcttttgaaagtattactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgt |
114 |
Q |
| |
|
||||| |||| || |||| ||||||||||| |||| ||||||||||| | | ||||| |||| ||| | ||||||| ||||||||| |||||||| |
|
|
| T |
39225 |
atgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgcacctgatactggaaaaatgttctcgtgtcacaatgaagggagtgaaacatgt |
39126 |
T |
|
| Q |
115 |
ggtagaaaactgcacacaacttagagggatt |
145 |
Q |
| |
|
|||| | |||||||| ||||| |||| |||| |
|
|
| T |
39125 |
ggtaaacaactgcacgcaactgagagagatt |
39095 |
T |
|
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