View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_12 (Length: 481)
Name: NF10104A_low_12
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_12 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Complemental strand, 87814 - 87358
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87814 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
87715 |
T |
|
| Q |
120 |
ttgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcataggaacaagcctgagttttgca |
219 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
87714 |
ttgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgca |
87615 |
T |
|
| Q |
220 |
tagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggct |
319 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87614 |
tacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggct |
87515 |
T |
|
| Q |
320 |
cacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87514 |
cacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagg |
87415 |
T |
|
| Q |
420 |
gtccacactcttgttcacatttttaaatttcttctttgactccatattcatctcagt |
476 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
87414 |
gtccacactcttgttcacatttttcaatttcttctttgactccatattcatctcagt |
87358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Complemental strand, 95830 - 95388
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95830 |
aatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
95731 |
T |
|
| Q |
120 |
ttgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcataggaacaagcctgagttttgca |
219 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
95730 |
ttgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgca |
95631 |
T |
|
| Q |
220 |
tagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggct |
319 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
95630 |
tacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggct |
95531 |
T |
|
| Q |
320 |
cacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
95530 |
cacaagcatgctcggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg------------ |
95443 |
T |
|
| Q |
420 |
gtccacactcttgttcacatttttaaatttcttctttgactccatattcatctcagt |
476 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
95442 |
--ccacactcttgttcacatttttcaatttcttttttgactccatattcatctcagt |
95388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Original strand, 40878469 - 40878925
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878469 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
40878568 |
T |
|
| Q |
120 |
ttgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcataggaacaagcctgagttttgca |
219 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
40878569 |
ttgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgca |
40878668 |
T |
|
| Q |
220 |
tagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggct |
319 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878669 |
tacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggct |
40878768 |
T |
|
| Q |
320 |
cacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878769 |
cacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagg |
40878868 |
T |
|
| Q |
420 |
gtccacactcttgttcacatttttaaatttcttctttgactccatattcatctcagt |
476 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40878869 |
gtccacactcttgttcacatttttcaatttcttctttgactccatattcatctcagt |
40878925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Original strand, 40870452 - 40870894
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870452 |
aatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
40870551 |
T |
|
| Q |
120 |
ttgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcataggaacaagcctgagttttgca |
219 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
40870552 |
ttgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgagttttgca |
40870651 |
T |
|
| Q |
220 |
tagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggct |
319 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
40870652 |
tacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggct |
40870751 |
T |
|
| Q |
320 |
cacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
40870752 |
cacaagcatgctcggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg------------ |
40870839 |
T |
|
| Q |
420 |
gtccacactcttgttcacatttttaaatttcttctttgactccatattcatctcagt |
476 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
40870840 |
--ccacactcttgttcacatttttcaatttcttttttgactccatattcatctcagt |
40870894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
| Q |
31 |
cgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
120 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||| ||| || || |||||||||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
40352688 |
cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
| Q |
25 |
tccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaa |
104 |
Q |
| |
|
||||||||||| |||| ||| || |||||||| |||||| |||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
28346823 |
tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa |
28346744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 42730239 - 42730140
Alignment:
| Q |
20 |
aatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
119 |
Q |
| |
|
|||| ||||| | |||||||| || || ||||| ||||||||| |||||| || ||||| |||||||||||||||||||| || || || |||||||| |
|
|
| T |
42730239 |
aataatccaacctaggaaaaatagtctcagcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga |
42730140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
| Q |
66 |
agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
120 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
21715696 |
agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University