View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_123 (Length: 312)

Name: NF10104A_low_123
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_123
NF10104A_low_123
[»] chr3 (28 HSPs)
chr3 (20-312)||(41985557-41985852)
chr3 (22-270)||(41980825-41981073)
chr3 (139-278)||(9494822-9494961)
chr3 (125-280)||(9407327-9407482)
chr3 (139-263)||(9343823-9343947)
chr3 (128-280)||(9425534-9425686)
chr3 (143-241)||(9448314-9448412)
chr3 (143-280)||(9617481-9617618)
chr3 (125-273)||(9329804-9329952)
chr3 (125-273)||(9336508-9336656)
chr3 (143-260)||(9655375-9655492)
chr3 (125-273)||(9695616-9695764)
chr3 (157-280)||(9397746-9397869)
chr3 (143-260)||(9646382-9646499)
chr3 (139-271)||(9352871-9353003)
chr3 (125-285)||(9432852-9433012)
chr3 (125-280)||(9416534-9416689)
chr3 (140-233)||(9340679-9340772)
chr3 (178-271)||(9377056-9377149)
chr3 (181-276)||(9614009-9614104)
chr3 (159-259)||(9441815-9441915)
chr3 (143-271)||(9626498-9626626)
chr3 (140-271)||(9347957-9348088)
chr3 (140-271)||(9369611-9369742)
chr3 (125-294)||(9485969-9486138)
chr3 (139-240)||(9756381-9756482)
chr3 (211-240)||(16011768-16011797)
chr3 (125-173)||(9686751-9686799)
[»] chr8 (3 HSPs)
chr8 (20-269)||(44688680-44688929)
chr8 (20-185)||(13170579-13170744)
chr8 (245-312)||(13170758-13170825)
[»] chr1 (8 HSPs)
chr1 (20-280)||(18991165-18991422)
chr1 (174-280)||(4439821-4439927)
chr1 (139-280)||(4428592-4428733)
chr1 (143-259)||(235195-235311)
chr1 (148-263)||(8814385-8814500)
chr1 (150-267)||(246841-246958)
chr1 (143-246)||(251412-251515)
chr1 (148-233)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (128-271)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (138-273)||(7041464-7041599)
chr6 (143-279)||(7046801-7046937)
chr6 (143-271)||(7025720-7025854)
chr6 (143-271)||(7012784-7012918)
chr6 (143-204)||(7029850-7029911)
chr6 (145-270)||(9159515-9159646)
chr6 (143-270)||(9170782-9170915)
[»] chr7 (2 HSPs)
chr7 (138-270)||(3695661-3695792)
chr7 (125-233)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (139-263)||(18571086-18571213)
chr5 (143-270)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 41985852 - 41985557
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactcccattgttttggtttccctggtgaagatgg 116  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  41985852 atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatgg 41985753  T
Q  117 tttaaagcttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985752 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 41985653  T
Q  217 ttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgtattcaacgattttgaccagatgctttgtggg 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  41985652 ttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattctacgattttgaccagatgctttgtggg 41985557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 41981073 - 41980825
Alignment:
Q  22 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactcccattgttttggtttccctggtgaagatggtttaa 121  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| |||| |||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  122 agcttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 221  Q
    | |||||||||||  | |||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttt 41980874  T
Q  222 tgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttt 270  Q
    ||||||||||||  |||||||||||||||||||||||||| | ||||||    
T  41980873 tgcttctgcttcaaatttgtctgttgtcaaaggaaattgtattatcttt 41980825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 9494822 - 9494961
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 238  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  239 tgtctgttgtcaaaggaaattgtgtcatctttagtgatga 278  Q
    |||  |||  |||||| |||||||||||||||| ||||||    
T  9494922 tgtgcgtttccaaagggaattgtgtcatctttattgatga 9494961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 9407482 - 9407327
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||||||  ||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  225 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 280  Q
    ||| ||||||||||||| ||||| |||||| ||||||||| |||||| ||||||||    
T  9407382 ttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattgatgatg 9407327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 9343947 - 9343823
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 238  Q
    |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9343947 cttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatt 9343848  T
Q  239 tgtctgttgtcaaaggaaattgtgt 263  Q
    ||| ||||   | ||||||||||||    
T  9343847 tgtgtgttcctagaggaaattgtgt 9343823  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 128 - 280
Target Start/End: Complemental strand, 9425686 - 9425534
Alignment:
Q  128 atgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    |||||||  ||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  228 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 280  Q
     ||||||||||||| ||||| |||||| ||||||||||||||||  |||||||    
T  9425586 agcttcggatttgtgtgttgccaaagggaattgtgtcatctttatcgatgatg 9425534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 9448412 - 9448314
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgt 241  Q
    |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  9448412 atgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgcttctgcttcggatttgt 9448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 9617481 - 9617618
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||||||||||| |||||||     
T  9617481 atgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtg 9617580  T
Q  243 tgttgtcaaaggaaattgtgtcatctttagtgatgatg 280  Q
    ||||  |||||| |||||||||||||||| ||| ||||    
T  9617581 tgtttccaaagggaattgtgtcatctttattgacgatg 9617618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 9329952 - 9329804
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||||||  | ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  225 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 273  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9329852 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9329804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 9336656 - 9336508
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||||||  | ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  225 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 273  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9336556 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9336508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 9655375 - 9655492
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| || |||||||||||||     
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9655474  T
Q  243 tgttgtcaaaggaaattg 260  Q
    ||||  |||||| |||||    
T  9655475 tgtttccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 9695616 - 9695764
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||| ||| | |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  225 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 273  Q
     |||||||| || |||| |||||  || || ||||||||||||| ||||    
T  9695716 atctgcttcagagttgtgtgttgcaaatgggaattgtgtcatctatagt 9695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 280
Target Start/End: Complemental strand, 9397869 - 9397746
Alignment:
Q  157 aaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaa 256  Q
    ||||| || ||||||  ||||||||||||||| || |||||||| | |||||||||||| ||||| ||||| |||| |||||||| ||||| |||||| |    
T  9397869 aaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttccgcttcagctttggatttgtgtgttgccaaaggga 9397770  T
Q  257 attgtgtcatctttagtgatgatg 280  Q
    |||||||| |||||| ||||||||    
T  9397769 attgtgtcgtctttattgatgatg 9397746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 9646382 - 9646499
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| || |||||||||||||     
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9646481  T
Q  243 tgttgtcaaaggaaattg 260  Q
    ||||  |||||| |||||    
T  9646482 tgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 9353003 - 9352871
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 238  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| ||||||||||||||||||||||| || ||||     
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggttgggatc 9352904  T
Q  239 tgtctgttgtcaaaggaaattgtgtcatcttta 271  Q
    ||| | ||  |||||||||||||||||||||||    
T  9352903 tgtgtcttcccaaaggaaattgtgtcatcttta 9352871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 285
Target Start/End: Complemental strand, 9433012 - 9432852
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||| ||| |||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  225 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgtattc 285  Q
    ||| || |||||||||| ||||  | |||| |||||| ||||||||| |||||||||||||    
T  9432912 ttcagcctcggatttgtgtgtttccgaagggaattgtatcatctttattgatgatgtattc 9432852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 9416689 - 9416534
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  225 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 280  Q
    ||| || | |||| ||| ||||   ||||| ||||||||  |||||| ||||||||    
T  9416589 ttcagccttggatatgtgtgttactaaagggaattgtgttgtctttattgatgatg 9416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 233  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 9377149 - 9377056
Alignment:
Q  178 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 271  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| |||| ||| | ||  |||||||||||||||||||||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgtcatcttta 9377056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 9614009 - 9614104
Alignment:
Q  181 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgat 276  Q
    |||||||  ||||| |||||||||| ||||||||| ||||||||||||||||| ||| ||| | ||  ||||||||||||||| ||||||| ||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattgat 9614104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 9441815 - 9441915
Alignment:
Q  159 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaat 258  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||| || | |||| ||| |||||||||||| |||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgtcaaagggaat 9441914  T
Q  259 t 259  Q
    |    
T  9441915 t 9441915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 271
Target Start/End: Original strand, 9626498 - 9626626
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || |||||||||||||     
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagcttcggatttgtg 9626597  T
Q  243 tgttgtcaaaggaaattgtgtcatcttta 271  Q
    ||||  |||||| |||||  |||||||||    
T  9626598 tgtttccaaagggaattgcatcatcttta 9626626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 9348088 - 9347957
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 239  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9347989  T
Q  240 gtctgttgtcaaaggaaattgtgtcatcttta 271  Q
     | | ||   ||||||||||||||| ||||||    
T  9347988 atgtattccgaaaggaaattgtgtcgtcttta 9347957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 9369742 - 9369611
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 239  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9369643  T
Q  240 gtctgttgtcaaaggaaattgtgtcatcttta 271  Q
     | | ||   ||||||||||||||| ||||||    
T  9369642 atgtattccgaaaggaaattgtgtcgtcttta 9369611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 294
Target Start/End: Original strand, 9485969 - 9486138
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||||||  | |||||||||||||||||||| |||||  || ||   | ||| |||||||  |||||||| |||||| | | |||| | ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggggaagaatgtgctttttctgc 9486068  T
Q  225 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgtattcaacgatttt 294  Q
    ||| ||||||||||||| | ||| ||| || || ||||| || ||||| ||| |||| || |||||||||    
T  9486069 ttcggcttcggatttgtgtattggcaatgggaactgtgtgatatttagggattatgttttgaacgatttt 9486138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 9756482 - 9756381
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 238  Q
    ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| || ||||| ||||| |||||||    
T  9756482 cttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcattctctgcatctgcatcggatt 9756383  T
Q  239 tg 240  Q
    ||    
T  9756382 tg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 16011768 - 16011797
Alignment:
Q  211 tgttcgttttctgcttctgcttcggatttg 240  Q
    ||||||||||||||||||||||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttg 16011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggc 173  Q
    ||||||| ||| | ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 44688680 - 44688929
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactcccattgttttggtttccctggtgaagatggttt 119  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||| ||| ||||||| ||||| |||||||||||| |    
T  44688680 atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtct 44688779  T
Q  120 aaagcttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 219  Q
    |  |||||||||||||   ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||    
T  44688780 acggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattt 44688879  T
Q  220 tctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctt 269  Q
    ||| || ||||||||||||||||| ||| |||||| |||||||| |||||    
T  44688880 tctactactgcttcggatttgtctattgccaaagggaattgtgtaatctt 44688929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 13170579 - 13170744
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactcccattgttttggtttccctggtgaagatggttt 119  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| | ||| |||  ||||||||||||||| |||||||    
T  13170579 atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttt 13170678  T
Q  120 aaagcttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 185  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170679 aaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 13170758 - 13170825
Alignment:
Q  245 ttgtcaaaggaaattgtgtcatctttagtgatgatgtattcaacgattttgaccagatgctttgtggg 312  Q
    |||||||||||||||||||||||||||||||||||| |||| || || ||||| ||||||||||||||    
T  13170758 ttgtcaaaggaaattgtgtcatctttagtgatgatgcattccactatgttgacgagatgctttgtggg 13170825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 18991422 - 18991165
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactcccattgttttggtttccctggtgaagatggttt 119  Q
    |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| ||| | ||| |    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtct 18991323  T
Q  120 aaagcttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 219  Q
    ||| ||  | |||||  | ||| ||||||   ||||| |||||   | || |  ||| |||||| |||| ||||||||||||||||||||||||||||||    
T  18991322 aaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgttt 18991226  T
Q  220 tctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 280  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||| |||||| ||| ||||    
T  18991225 tctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtctttattgacgatg 18991165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 174 - 280
Target Start/End: Complemental strand, 4439927 - 4439821
Alignment:
Q  174 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 273  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| |||||||||||||||| |    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttatt 4439828  T
Q  274 gatgatg 280  Q
    |||||||    
T  4439827 gatgatg 4439821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 4428733 - 4428592
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 238  Q
    ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| |||||||| || |    
T  4428733 cttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctgcttctgagt 4428634  T
Q  239 tgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 280  Q
    ||||||||   ||||| |||||||||||||||| ||||||||    
T  4428633 tgtctgttactaaagggaattgtgtcatctttattgatgatg 4428592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 235311 - 235195
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||     
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgtg 235212  T
Q  243 tgttgtcaaaggaaatt 259  Q
    ||||  |||||| ||||    
T  235211 tgttcccaaagggaatt 235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 8814385 - 8814500
Alignment:
Q  148 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttg 247  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| |||||||| ||||     
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgtgtgttc 8814484  T
Q  248 tcaaaggaaattgtgt 263  Q
     |||||| ||||||||    
T  8814485 ccaaagggaattgtgt 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 246958 - 246841
Alignment:
Q  150 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtc 249  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||      || || |||||||||||||||| |||||||| ||||  |    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgctttggatttgtgtgttcac 246859  T
Q  250 aaaggaaattgtgtcatc 267  Q
    ||||| ||||||||||||    
T  246858 aaagggaattgtgtcatc 246841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 251412 - 251515
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| ||||||||||     
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgtg 251511  T
Q  243 tgtt 246  Q
    ||||    
T  251512 tgtt 251515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  148 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 233  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 128 - 271
Target Start/End: Original strand, 20694304 - 20694447
Alignment:
Q  128 atgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    |||||||| | |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  228 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 271  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||    
T  20694404 tgcttcggatttgtgtgttgccaaagggaattgtgtcatcttta 20694447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 138 - 273
Target Start/End: Complemental strand, 7041599 - 7041464
Alignment:
Q  138 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 237  Q
    |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| |||| |||||||||||||    
T  7041599 acttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgtttctgcttcggat 7041500  T
Q  238 ttgtctgttgtcaaaggaaattgtgtcatctttagt 273  Q
    ||||  |||| |||||| ||||||||||||||||||    
T  7041499 ttgtgcgttgccaaagggaattgtgtcatctttagt 7041464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 7046937 - 7046801
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||  ||| |||||||     
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgta 7046838  T
Q  243 tgttgtcaaaggaaattgtgtcatctttagtgatgat 279  Q
    ||||| |||||| |||||||| ||| |||||| ||||    
T  7046837 tgttgccaaagggaattgtgtgatcattagtgctgat 7046801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 7025854 - 7025720
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 236  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||   ||      ||||||||||||||||| |||||| ||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgttcgttttctgcttgtgcttcaga 7025755  T
Q  237 tttgtctgttgtcaaaggaaattgtgtcatcttta 271  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7025754 tttgtgtgttgccaaagggaattctgtcatcttta 7025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 7012918 - 7012784
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 236  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||   ||      ||||||||||||||| | |||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgcctgtgcttcgga 7012819  T
Q  237 tttgtctgttgtcaaaggaaattgtgtcatcttta 271  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7012818 tttgtgtgttgccaaagggaattctgtcatcttta 7012784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 9159515 - 9159646
Alignment:
Q  145 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcggatt 238  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcagatt 9159614  T
Q  239 tgtctgttgtcaaaggaaattgtgtcatcttt 270  Q
    ||| ||||  |||||| |||||| ||||||||    
T  9159615 tgtgtgtttccaaagggaattgtatcatcttt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 9170915 - 9170782
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 236  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcaga 9170816  T
Q  237 tttgtctgttgtcaaaggaaattgtgtcatcttt 270  Q
    ||||| ||||  | |||| |||||| ||||||||    
T  9170815 tttgtgtgtttcccaagggaattgtatcatcttt 9170782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 270
Target Start/End: Complemental strand, 3695792 - 3695661
Alignment:
Q  138 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 237  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T
Q  238 ttgtctgttgtcaaaggaaattgtgtcatcttt 270  Q
    ||||||| || |||||| |||||||| ||||||    
T  3695693 ttgtctgctgccaaagggaattgtgtgatcttt 3695661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  125 ttgatgtgttcggacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||||||  | ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  225 ttctgcttc 233  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 18571213 - 18571086
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt---ttgttcttggggaatggatgttcgttttctgcttctgcttcgg 235  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||   |||||||| || |  | | |||| ||||||  |||||||||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctgcttcgg 18571114  T
Q  236 atttgtctgttgtcaaaggaaattgtgt 263  Q
    |||||| ||||  |||||| ||||||||    
T  18571113 atttgtgtgtttccaaagggaattgtgt 18571086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 33541750 - 33541623
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||||||||||| | | ||||| |||||   ||||||||| ||||  ||||||||||| |||  ||  ||||| |||||||| |||||||| ||||||||    
T  33541750 atgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttccttttctgcatctgcttctgatttgtc 33541651  T
Q  243 tgttgtcaaaggaaattgtgtcatcttt 270  Q
     |||| |||||| ||||||||| |||||    
T  33541650 cgttgccaaaggtaattgtgtcctcttt 33541623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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