View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_127 (Length: 308)

Name: NF10104A_low_127
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_127
NF10104A_low_127
[»] chr2 (2 HSPs)
chr2 (56-192)||(15827214-15827348)
chr2 (185-289)||(15827495-15827599)
[»] chr7 (1 HSPs)
chr7 (47-104)||(5600618-5600674)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 15827214 - 15827348
Alignment:
Q  56 tttaggtgatctatgattgcatttgagataagactatacctttttacttgacacttgatatgcctcaatacttctgctgatagacaagctagactattgt 155  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  15827214 tttaggtgatctatgattgcatt-gagataagactatacctttttacttgacacctgatatgcctcaatacttctgctgatagacaagctagactcttgt 15827312  T
Q  156 gatttcttcatgaaattgttaaagcatatgagtcaag 192  Q
    |||||||||||||||||||| ||||||||||||||||    
T  15827313 gatttcttcatgaaattgtt-aagcatatgagtcaag 15827348  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 15827495 - 15827599
Alignment:
Q  185 gagtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttcttatgatataaccaacattttgtattt 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15827495 gagtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttctcatgatataaccaacattttgtattt 15827594  T
Q  285 tgatg 289  Q
    |||||    
T  15827595 tgatg 15827599  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 5600674 - 5600618
Alignment:
Q  47 tcttctctttttaggtgatctatgattgcatttgagataagactatacctttttactt 104  Q
    ||||||||||||||||||||||||||| || ||||||| ||||| ||  |||||||||    
T  5600674 tcttctctttttaggtgatctatgattaca-ttgagatgagactctatgtttttactt 5600618  T

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