View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_128 (Length: 307)
Name: NF10104A_low_128
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_128 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 10790142 - 10790438
Alignment:
| Q |
12 |
atgaatgattaaagtgacactatatttgaatacgttgtgtagtagtaattcattagcagtaggcaatggacctaagccttatagttgtgttgtataattc |
111 |
Q |
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| T |
10790142 |
atgaatgattaaagtgacactagatttgaatacgttgtgtagtagtaattcattagcagtaggcaatggacctaagccttatagttgtgttgtataattc |
10790241 |
T |
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| Q |
112 |
attagcagtaggcactggacctaagtcttataattgatcccttttatttgtaaacacgccaattccctttttggaatacactacattggtaactgccaaa |
211 |
Q |
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| T |
10790242 |
attagcagtaggcactggacctaagtcttataattgatcccttttatttctagacacgccaactccctttttggaatacactacattggtaactgccaaa |
10790341 |
T |
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| Q |
212 |
cgaactgatcagcagctacaataacactagatgcctgcagaccaatcgaaatctatacatgtcg-actgagaagaatattgaaagggaaacagtaga |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||| |
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| T |
10790342 |
cgaactgatcagcagctacaataacactagatgcccgcagaccaatcgaaatttatacatgttgaactgagatgaatattgaaagggaaacagtaga |
10790438 |
T |
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