View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_129 (Length: 306)
Name: NF10104A_low_129
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_129 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 30024914 - 30024625
Alignment:
| Q |
11 |
atgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgctgcacgggtagttatggaagcccacaggcttgtaagccca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024914 |
atgaatcaagtggtgggctgtaagagtgcttgttatgcttttaactcacctgagtattgttgcacgggtagttatggaagcccacaggcttgtaagccca |
30024815 |
T |
|
| Q |
111 |
ctagttattcgagaatctttaagttggcttgccctaaggcttactcttatgcctttgatgatcctacaagtattgttacttgttctatggctaattattt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024814 |
ctagttattcgagaatctttaagttggcttgccctaaggcttactcttatgcctttgatgatcctacaagtattgttacttgttctatggctaattattt |
30024715 |
T |
|
| Q |
211 |
ggtcactttctgtccttgaattgatcaaattagcatttagcttatagtttgttactttcaatgtttgttgtactaggttaatgaactact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024714 |
ggtcactttctgtccttgaattgatcaaattagcatttagcttatagtttgttactttcaatgtttgttgtactaggttaatgaactact |
30024625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 45273340 - 45273168
Alignment:
| Q |
20 |
gtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgctgcacgggtagttatggaagcccacaggcttgtaagcccactagttatt |
119 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||| |||| ||||||||| || |||| | ||| | ||||||| | || ||||||||| ||||| |
|
|
| T |
45273340 |
gtggtgggttgtagaagtgcttgtgctgctttcaactctcctaggtattgctgtactggtaactttggtaccccacagacctgcaagcccactgcttatt |
45273241 |
T |
|
| Q |
120 |
cgagaatctttaagttggcttgccctaaggcttactcttatgcctttgatgatcctacaagtattgttacttg |
192 |
Q |
| |
|
| |||||||| || |||||||| ||||||||||||||||| | |||||| ||||| ||||||| |||||| |
|
|
| T |
45273240 |
caagaatcttcaaaactgcttgcccaaaggcttactcttatgcttatgatgaccctaccagtattgctacttg |
45273168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University