View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_131 (Length: 303)
Name: NF10104A_low_131
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_131 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 475794 - 475538
Alignment:
| Q |
29 |
aattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttctttcaaatcggttatcaaaattttca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475794 |
aattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttctttcaaatcggttatcaaaattttca |
475695 |
T |
|
| Q |
129 |
cttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475694 |
cttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgat |
475595 |
T |
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| Q |
229 |
cactccaattgcgcctatcatgctaactcacatgaagcataagcatcagttaattag |
285 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
475594 |
cactccaattgcgcctatcaagctaactcacatgaagcataagcatcagttaattag |
475538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 449745 - 449620
Alignment:
| Q |
121 |
aattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaag |
220 |
Q |
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|||||||||||||||||||| | ||||||||||||||||| ||||||||| ||| |||| ||||| ||||| |||||||||||||| || | ||||||| |
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| T |
449745 |
aattttcacttcctctgtctcattaaccatagattttggaactatcttctctttaacatcaactacttcttcagctttaccccaaagtacaatatacaag |
449646 |
T |
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| Q |
221 |
ccaatgatcactccaattgcgcctat |
246 |
Q |
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|||||||||||||||||||||||||| |
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| T |
449645 |
ccaatgatcactccaattgcgcctat |
449620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 469129 - 469011
Alignment:
| Q |
147 |
ccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
246 |
Q |
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|||||||||||||| |||| |||| ||| | || ||||| ||||| |||||||||||||| || | |||||| |||||||||||||||||||| ||||| |
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| T |
469129 |
ccatagattttggaactatattctctttaatatcaactacttcttcagctttaccccaaagtacaatatacaaaccaatgatcactccaattgcacctat |
469030 |
T |
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| Q |
247 |
catgctaactcacatgaag |
265 |
Q |
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|| |||||| ||||||||| |
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| T |
469029 |
caagctaacacacatgaag |
469011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 457977 - 457916
Alignment:
| Q |
185 |
acatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
246 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
457977 |
acatcttcagctttaccccaaagcacagtatacaagccaatgatcactccaattgcgcctat |
457916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 481303 - 481203
Alignment:
| Q |
155 |
tttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaa |
254 |
Q |
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||||||||| |||||| |||||| | |||||||||| |||||||||||||| || |||||| || ||||||||||||||||| || |||| ||||| |
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| T |
481303 |
tttggatctgtcttctctttgacttcagctacatcttcagctttaccccaaagtacagtatacaaacctatgatcactccaattgcaccaatcaagctaa |
481204 |
T |
|
| Q |
255 |
c |
255 |
Q |
| |
|
| |
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|
| T |
481203 |
c |
481203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 27489261 - 27489370
Alignment:
| Q |
144 |
taaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcc |
243 |
Q |
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|||| ||||||||| ||| | ||||| ||| |||| ||||||||||| ||||| |||||||| || | ||||||||||||||||||||||||||| || |
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| T |
27489261 |
taacgatagatttttgatttcccttctctttcacatcaactacatcttcagcttttccccaaagaacaatatacaagccaatgatcactccaattgcacc |
27489360 |
T |
|
| Q |
244 |
tatcatgcta |
253 |
Q |
| |
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||||| |||| |
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| T |
27489361 |
tatcaagcta |
27489370 |
T |
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