View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_133 (Length: 303)

Name: NF10104A_low_133
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_133
NF10104A_low_133
[»] chr2 (1 HSPs)
chr2 (19-303)||(41966560-41966844)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 41966844 - 41966560
Alignment:
Q  19 attatgatctttgagaggggtcggttgggtaataaacaatttacgcattaagacttagtcttaagaaaatatttgaagagtgtgggaatgctgggctttg 118  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966844 attatgatctttgagatgggtcggtagtgtaataaacaatttacgcattaagacttagtcttaagaaaatatttgaagagtgtgggaatgctgggctttg 41966745  T
Q  119 ggtagtcattaatatcacataacgaggaggagagttccaataacctcaagtgggtagacagagaaaagtaatactatagtcttggattggatttttccat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966744 ggtagtcattaatatcacataacgaggaggagagttccaataacctcaagtgggtagacagagaaaagtaatactatagtcttggattggatttttccat 41966645  T
Q  219 ttggaatggttgggtttgtcttttgaaagagttgaaaatcgtagtttcactataacactcgtgtcctcatcttagataagtaaca 303  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  41966644 ttggaatggttgggtttgtcttttgaaagagttgaaagtcgtagtttcactataacactcgtgtcctcatcttagataaataaca 41966560  T

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