View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_136 (Length: 301)
Name: NF10104A_low_136
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_136 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 37726333 - 37726066
Alignment:
| Q |
11 |
gtgttgattgggttttcttgcagctcctaattagctagtttttaggtgtcagtgtttctagtactaggaaaatcttaatactaagacacctgaataatga |
110 |
Q |
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| T |
37726333 |
gtgttgatacggttttcttgcagctcctaattagctagtttttaggtgtcagtgtttctagtactaggaaaatcttaatactaagacacctgaatgatga |
37726234 |
T |
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| Q |
111 |
agtctttatatgaaggacacaattttctgctgtcaaggtgatttcgaaatgaacaagtcagtcaaagttgatttacttgggtaacaagtgtaatcttgta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37726233 |
agtctttatatgaaggacacaattttctgctgtcaaggtgatttcgaaataaacaagtcagccaaagttgatttacttgggtaacaagtgtaatcttgta |
37726134 |
T |
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| Q |
211 |
agtaagttgtctatttagatactctagttaacatcctaggtggcagtagagtgttttatggtttaagt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37726133 |
agtaagttgtctatttagatactctagttaacatcctaggtggcagtagagtgttttatggtttaagt |
37726066 |
T |
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