View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_140 (Length: 298)
Name: NF10104A_low_140
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_140 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 37801625 - 37801882
Alignment:
| Q |
10 |
agaagatgaggccaagaagagaaagacagaaccatggcttccttgtattgatcatagctctttgagtgagtcttccttcaatcttcaatgagcaaggaag |
109 |
Q |
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| T |
37801625 |
agaagatgaggacaagaagagaaagacagaaccatggcttccttgtattgatcatggct------------------tcaatcttcaatgagcaaggaag |
37801706 |
T |
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| Q |
110 |
ctttagaaaattgagggaacagtcaaataaatgataaatggtagagaagagtcaaacttttcgaattaaactattgtgccatattgtaatgagttttgaa |
209 |
Q |
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| T |
37801707 |
ctttagaaaattgagggaacagtcaaataaatgataaatggtaga--agagtcaaacttttcgaattaaactattgtgccatattgtaatgagttttgaa |
37801804 |
T |
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| Q |
210 |
aaggatgagaggaggacacgtattctatatcaaagaagagaagagtnnnnnnnntatgcacattaatcttggatatta |
287 |
Q |
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| T |
37801805 |
aatgatgagaggaggacacgtattctatatcaaagaagagaagagtaaaaaaaatatgcacattaatcttggatatta |
37801882 |
T |
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