View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_144 (Length: 295)
Name: NF10104A_low_144
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_144 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 29442595 - 29442464
Alignment:
| Q |
9 |
aacagagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggt-------ttagggtttttcct |
101 |
Q |
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| T |
29442595 |
aacagagagaggattccggtaagtatctccggcggaagatccaccattggaaggaagg----aaggttctagttagggtttaggccttagggtttttcct |
29442500 |
T |
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| Q |
102 |
ttcttcctctccatgtacgacccaaatgcaacacag |
137 |
Q |
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| T |
29442499 |
ttcttcctctccttgtacgacccaaatgcaacacag |
29442464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 29442391 - 29442311
Alignment:
| Q |
209 |
cttgattacgtgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
289 |
Q |
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| T |
29442391 |
cttgattacatgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
29442311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 29424127 - 29424226
Alignment:
| Q |
9 |
aacagagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttcttcc |
108 |
Q |
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| T |
29424127 |
aacagagagaggattccggtgagtatctccggcggaagatccgtcattgg-agcttggaagttaggttctagctagggtttagagtttttcatttcttcc |
29424225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 29452587 - 29452537
Alignment:
| Q |
9 |
aacagagagaggattccggtaagtatctccggcggaagatccgccattgga |
59 |
Q |
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| T |
29452587 |
aacagagagaggataccggtaagtatctccggcggaagatccgccattgga |
29452537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 29452503 - 29452466
Alignment:
| Q |
57 |
ggaaggaaggaaggaaggttctagttagggtttagggt |
94 |
Q |
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| T |
29452503 |
ggaaggaaggaaggaaggttgtagctagggtttagggt |
29452466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 10354101 - 10354157
Alignment:
| Q |
49 |
ccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt |
106 |
Q |
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| T |
10354101 |
ccgccattgtaaggaaggaatgaaggttct-gctagggtttagggtttttcatttctt |
10354157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 9283404 - 9283343
Alignment:
| Q |
15 |
gagaggattccggtaagtatctccggcggaagatc---cgccattggaaggaaggaaggaag |
73 |
Q |
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| T |
9283404 |
gagaagatttcggcaagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag |
9283343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 10336751 - 10336785
Alignment:
| Q |
36 |
tccggcggaagatccgccattggaaggaaggaagg |
70 |
Q |
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| T |
10336751 |
tccggcggaagatccgccattgtaaggaaggaagg |
10336785 |
T |
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