View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_149 (Length: 291)
Name: NF10104A_low_149
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_149 |
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Alignment Details
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 21432247 - 21432195
Alignment:
| Q |
16 |
atagtagaacaaacttgctgaaataaggtcgtatcttacgacatcattcatga |
68 |
Q |
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| T |
21432247 |
atagtagaacaaacttgctgaaataaggtcgtatcttacgacatcattcatga |
21432195 |
T |
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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 21432185 - 21432111
Alignment:
| Q |
128 |
cctaatagacctcgtgagagattacattctctagaaagttgtatatgtgagaactcatcacaatagataggaata |
202 |
Q |
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| T |
21432185 |
cctaatagacctaatgacagattacattctctagaatgttgtatatgtgagaactaatcacaatagatacgaata |
21432111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 21432032 - 21432004
Alignment:
| Q |
259 |
taccttgtgtatgtatccaaatgtcaaac |
287 |
Q |
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| T |
21432032 |
taccttgtgtatgtatccaaatgtcaaac |
21432004 |
T |
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