View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_150 (Length: 291)
Name: NF10104A_low_150
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_150 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 32907352 - 32907519
Alignment:
| Q |
1 |
atgaatgaataaatcaatgaaaatcctgacaaaatactctcactttat--cctatattatgtgtgaaccactcaataatcctcccattaattgtcactcc |
98 |
Q |
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| T |
32907352 |
atgaatgaataaatcaatgaaaatcctgacaaaatactctcactttatatcctatattatgtatgaaccactcaataatcctcccactaattgtcactcc |
32907451 |
T |
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| Q |
99 |
tctcttggttagcaaatcagcagaattgttggcttccctattcactcctctcttttgtattttctgtc |
166 |
Q |
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| T |
32907452 |
tctcttggttagcaaatcagcagaattgttggcttccctgttcactcctctcttttgtattttctgtc |
32907519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 32907580 - 32907689
Alignment:
| Q |
179 |
tgtagcatgtcttaaaacttaatatattaaaccttatgtggagggtattctgccattggatggatttgcttccaggtaactgtaatgaaatactactggc |
278 |
Q |
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||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32907580 |
tgtagcatgtcttaaaacttaatgtattaaactttatatggagggtattcttccattggatggatttgcttccaggtaattgtaatgaaatactactggc |
32907679 |
T |
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| Q |
279 |
tttacactat |
288 |
Q |
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|||| ||||| |
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| T |
32907680 |
tttatactat |
32907689 |
T |
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