View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_151 (Length: 291)
Name: NF10104A_low_151
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_151 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 12325419 - 12325709
Alignment:
| Q |
1 |
tgtggaaactaaaaaacatgaaattgaggaattataaatccataaaacacactaatagcaagaataagaaagcatttttgaaatttaattaccttggagt |
100 |
Q |
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| T |
12325419 |
tgtggaaactaaaaaacatgaaatgtagggattataaaaccataaaacacactaataacaagaataagaaagcatttttgaaatttaattaccttggagt |
12325518 |
T |
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| Q |
101 |
aaccatttggcatatcttgcacaacacaaccagagggaagcttcctacagttcacaaaacttgtagcaccagaagtttctctgatggtatctatagacac |
200 |
Q |
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| T |
12325519 |
aaccatttggcatatcttgcacaacacaaccagagggaagcttcctacagttcacaaaacttgtagcaccagaagtttctctgatggtatctatagacac |
12325618 |
T |
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| Q |
201 |
gtcaaccacagcccaaacaccttctgcatgctgcttgcaaaacctaaggaaatttacctcgcgaaccggaaccaaaggcgatagcacatga |
291 |
Q |
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| T |
12325619 |
gtcaaccacagcccaaacaccttctgcatgctgcttgcaaaacctaaggaaatttacctcgcgaaccggaaccaaaggcgatagcacatga |
12325709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 89 - 275
Target Start/End: Original strand, 28597362 - 28597551
Alignment:
| Q |
89 |
ttaccttggagtaaccatttggcatatcttgcacaacacaaccagagggaagcttcctacagttcacaaaacttgtagcaccag---aagtttctctgat |
185 |
Q |
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| T |
28597362 |
ttaccttagagtaaccatttggcatatcttgaaccacacaaccagaaggaagcctcctacaggtaagaaaagtgggtgcaccagctgaagtttctctgat |
28597461 |
T |
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| Q |
186 |
ggtatctatagacacgtcaaccacagcccaaacaccttctgcatgctgcttgcaaaacctaaggaaatttacctcgcgaaccggaaccaa |
275 |
Q |
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| T |
28597462 |
ggtatctatggacacatcaaccactgcccataccccttctgcatgttgcttgcaaaaccttagaaaactcacctcacgaacaggaaccaa |
28597551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 45745250 - 45745301
Alignment:
| Q |
89 |
ttaccttggagtaaccatttggcatatcttgcacaacacaaccagagggaag |
140 |
Q |
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| T |
45745250 |
ttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaag |
45745301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 45745363 - 45745411
Alignment:
| Q |
202 |
tcaaccacagcccaaacaccttctgcatgctgcttgcaaaacctaagga |
250 |
Q |
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| T |
45745363 |
tcaaccactgcccatacaccttctgcatgctgcttacagaaccgaagga |
45745411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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