View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_152 (Length: 291)
Name: NF10104A_low_152
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_152 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 32650774 - 32650608
Alignment:
| Q |
7 |
agcatctcaattcgtttactctttcctttcattaatttgcattatcgccgtgataaatggatcagaattgttctgatatctacacaaatataaacaacac |
106 |
Q |
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| T |
32650774 |
agcatctcaattcgtttactctttcctttcatttattttcattatggccgtgatgaatggatcagaattgttctgatatttacacaaatataaacaaacc |
32650675 |
T |
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| Q |
107 |
cctcatgaaatgatttcagttaatcattatgattgttcacgttctggtactttttcctttggattcc |
173 |
Q |
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| T |
32650674 |
cctcatgaaatgatttcagttaatcattatgattgttcacgttctggtactttttcctttggattcc |
32650608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 12537407 - 12537299
Alignment:
| Q |
169 |
attcctaacgcccctgatgtt---tactttcttccaaggaagttttaccacacgtttgagaagtccttgccaaaatctgatgtcagctcaggatttttgg |
265 |
Q |
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| T |
12537407 |
attcctaacgcccctgatgttgtttactttcttccaaggaagttttaccacacatttgagaagtagttgccaaaatctgatgtcaactcaggttttttgg |
12537308 |
T |
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| Q |
266 |
tatgatgtc |
274 |
Q |
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| T |
12537307 |
tatgatgtc |
12537299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 29175 - 29283
Alignment:
| Q |
169 |
attcctaacgcccctgatgtt---tactttcttccaaggaagttttaccacacgtttgagaagtccttgccaaaatctgatgtcagctcaggatttttgg |
265 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
29175 |
attcctaacgcccttgatgttgtttactttcttccaaggaagttttaccactcatttgagaagtcgttgccaaaatctgatgtcaactcaggttttttgg |
29274 |
T |
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| Q |
266 |
tatgatgtc |
274 |
Q |
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| T |
29275 |
tatgatgtc |
29283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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