View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_155 (Length: 288)

Name: NF10104A_low_155
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_155
NF10104A_low_155
[»] chr2 (17 HSPs)
chr2 (15-282)||(9292322-9292589)
chr2 (24-282)||(9357586-9357841)
chr2 (50-220)||(9283721-9283891)
chr2 (42-282)||(9316449-9316689)
chr2 (42-223)||(9329020-9329201)
chr2 (53-244)||(10353553-10353744)
chr2 (44-223)||(9321399-9321578)
chr2 (50-221)||(9060665-9060836)
chr2 (50-114)||(10336273-10336337)
chr2 (50-108)||(8573142-8573200)
chr2 (144-282)||(9275044-9275182)
chr2 (151-220)||(10372391-10372460)
chr2 (52-114)||(10372301-10372363)
chr2 (50-119)||(7115271-7115340)
chr2 (24-109)||(9274915-9275000)
chr2 (57-114)||(10348227-10348284)
chr2 (151-244)||(10348312-10348405)
[»] chr3 (1 HSPs)
chr3 (50-282)||(37462927-37463159)
[»] chr4 (1 HSPs)
chr4 (52-244)||(26575304-26575496)
[»] scaffold0667 (2 HSPs)
scaffold0667 (50-114)||(4912-4976)
scaffold0667 (162-282)||(5018-5138)
[»] chr8 (2 HSPs)
chr8 (50-112)||(41966362-41966424)
chr8 (164-220)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (51-112)||(29467429-29467489)
chr1 (51-109)||(29452955-29453013)
chr1 (51-108)||(29442970-29443027)
chr1 (55-112)||(29423702-29423759)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 9292322 - 9292589
Alignment:
Q  15 acctgtggatcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292322 acctgtggatcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 9292421  T
Q  115 cacctgcgcgatcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgt 214  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9292422 caccggcgcgatcaatgttttcagactcgagaatgttagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgt 9292521  T
Q  215 gatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttac 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292522 gatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttac 9292589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 282
Target Start/End: Original strand, 9357586 - 9357841
Alignment:
Q  24 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||   |||    
T  9357586 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacac---cgc 9357682  T
Q  124 gatcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 223  Q
      ||||||||   |||    |||||||||||||||| ||||||||| |||||||||||   ||||||| |  ||||| ||||| ||| || |||||||||    
T  9357683 cgtcaatgttgaaagatcggagaatgttagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgtt 9357782  T
Q  224 aggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttac 282  Q
     | ||||| ||||||| ||||   ||||| || |||||| |||||||||||||||||||    
T  9357783 ggcggcgttaggatgcctgaaagcgatttcgccattggagatggcgaggaggccgttac 9357841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 9283891 - 9283721
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 149  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||  |||| ||||||||||||||||| | ||||    
T  9283891 ccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccgcgttcaatgttttcagactccacaatg 9283792  T
Q  150 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 220  Q
    |||||||||| ||||||||||||||||||||||| ||||||| | ||||||| |||| ||| |||||||||    
T  9283791 ttagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttc 9283721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 42 - 282
Target Start/End: Original strand, 9316449 - 9316689
Alignment:
Q  42 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 141  Q
    ||||| |||||||| |||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||| |||  ||||||     || ||||| |    
T  9316449 tcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagatt 9316548  T
Q  142 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt 241  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| | | ||||||||||| |    
T  9316549 caagaatgttagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcat 9316648  T
Q  242 gaagcagatttggctattggaaatggcgaggaggccgttac 282  Q
    |||   |||||| | ||||||||||||||| ||||||||||    
T  9316649 gaaagcgatttgaccattggaaatggcgagaaggccgttac 9316689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 9329020 - 9329201
Alignment:
Q  42 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 141  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||       |||||  ||||| ||||| |    
T  9329020 tcggctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagatt 9329119  T
Q  142 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 223  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| ||||||||||||    
T  9329120 caagaatgttagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgtt 9329201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 10353553 - 10353744
Alignment:
Q  53 agagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtta 152  Q
    ||||||||||||||||||||||||||||| ||  | |||| |||||||||| ||||||||||  |   | || | |  ||| ||||| |  |||||||||    
T  10353553 agagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgtta 10353652  T
Q  153 gggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 244  Q
    ||||||| ||||||||||||||||||||||| ||| ||| | ||||| |||||| | | |||||||||||| ||||||| ||||||||||||    
T  10353653 gggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaa 10353744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 9321399 - 9321578
Alignment:
Q  44 ggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgc-gcgatcaatgttttcagactc 142  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||| | | || |||||  ||||| || || ||    
T  9321399 ggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcata-agcagcagcgattgatgttgtcggattc 9321497  T
Q  143 aagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 223  Q
     | ||||| |||||||| |||||| || |||||||| || | ||| ||| ||||| |||||||| ||| ||||||||||||    
T  9321498 cataatgtcagggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgtt 9321578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 9060836 - 9060665
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 149  Q
    ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||||    ||| ||||| ||   ||||    
T  9060836 ccaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccgcgattggggttgtcagagtcctcaatg 9060737  T
Q  150 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcg 221  Q
    |||||||||| |||||||| |||||||||  ||| || |||  | |||||||||||| ||| |||| |||||    
T  9060736 ttagggataggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttcg 9060665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 10336273 - 10336337
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| ||||||| |||||||||||||    
T  10336273 ccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcata 10336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 8573200 - 8573142
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 108  Q
    ||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||    
T  8573200 ccaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 9275044 - 9275182
Alignment:
Q  144 agaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga 243  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||   |||||||||||| ||| ||| ||||| || |   ||| ||||||| |||    
T  9275044 agaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctga 9275143  T
Q  244 agcagatttggctattggaaatggcgaggaggccgttac 282  Q
    ||  | |||||| |||||| || || | |||||||||||    
T  9275144 aggcggtttggccattggagatagcaatgaggccgttac 9275182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 10372391 - 10372460
Alignment:
Q  151 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 220  Q
    |||| |||| |||||||||||||||||||| |||||||||| | |||||||||||| ||| |||||||||    
T  10372391 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 10372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 10372301 - 10372363
Alignment:
Q  52 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    ||||||||||||||||||||| |||||||| ||| | |||| |||||||||| ||||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata 10372363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 7115340 - 7115271
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacct 119  Q
    ||||||||||||||| |||||||||||  | ||||| |||||| ||||||||||||||| ||||| ||||    
T  7115340 ccaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacct 7115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 9274915 - 9275000
Alignment:
Q  24 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 109  Q
    ||||||||||||||||  || |||| ||| ||||||||||| ||||| |||||||||| ||| |||||| |||| || ||||||||    
T  9274915 tcaaaagagtaatgtatatcagctaaccatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 10348227 - 10348284
Alignment:
Q  57 attctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    |||||||||||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 10348312 - 10348405
Alignment:
Q  151 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 244  Q
    |||| |||| |||||||||||||||||||||   ||||||| | |||||||||||| ||| ||||||||||||  ||  || ||||||||||||    
T  10348312 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaa 10348405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 50 - 282
Target Start/End: Original strand, 37462927 - 37463159
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 149  Q
    |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||  |   |||| | |  ||| |  || || | ||||    
T  37462927 ccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagccgcggttagggttgtttgattccataatg 37463026  T
Q  150 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcaga 249  Q
    | ||||| ||  | |||||||||||||||||||  ||||||| | |||||||||||| ||| |||||||||||| | ||||| ||||||||||||   ||    
T  37463027 taagggacaggcatagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcga 37463126  T
Q  250 tttggctattggaaatggcgaggaggccgttac 282  Q
    |||||| |||||| || ||||||||||||||||    
T  37463127 tttggccattggagatagcgaggaggccgttac 37463159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 26575304 - 26575496
Alignment:
Q  52 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtt 151  Q
    |||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||  |   | |||| |  ||| ||||| |  ||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgattagggttgtcagattggagaatgtt 26575403  T
Q  152 agggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 244  Q
    |||||| | ||||||||||||||||||||||| || ||||   |||| ||||||| ||| || ||||||||| |||||||  |||||||||||    
T  26575404 agggatgggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaa 26575496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 4912 - 4976
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    |||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  4912 ccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 5018 - 5138
Alignment:
Q  162 agagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga-agcagatttggctattg 260  Q
    ||||||||||||||||||||   ||||||| |  ||||||||||| ||| |||||||||||| | ||||| ||||||  ||| ||| ||||| ||  |||    
T  5018 agagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagc-gatttcgccgttg 5116  T
Q  261 gaaatggcgaggaggccgttac 282  Q
    |||| |||||||||||||||||    
T  5117 gaaacggcgaggaggccgttac 5138  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 41966424 - 41966362
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 112  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  41966424 ccaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 41966310 - 41966254
Alignment:
Q  164 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 220  Q
    |||||||||||||||||||| |||||||    ||||||||||| ||| |||||||||    
T  41966310 agggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 41966254  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 29467489 - 29467429
Alignment:
Q  51 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 112  Q
    |||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||    
T  29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
Q  51 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 109  Q
    ||||||||||||||||||||||||||| || |||| |||||| |||| |||||||||||    
T  29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
Q  51 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 108  Q
    ||||||||||||| |||||||||||||  ||| ||||||||| |||||||||||||||    
T  29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 29423702 - 29423759
Alignment:
Q  55 agattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 112  Q
    ||||| ||||||||||||||||  | |||||||||||| |||||||||||| ||||||    
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgca 29423759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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