View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_160 (Length: 287)
Name: NF10104A_low_160
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_160 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 34369207 - 34368942
Alignment:
| Q |
7 |
tgtttcacactgtttttgttatttgtttgtgcgtgagaattaagcgggaaatttcaatgatgagtctctannnnnnngctgcagctcataggaaaaacac |
106 |
Q |
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| T |
34369207 |
tgtttcacactgtttttgttatttgtttgtgcgtgagaattaagcgggaaatttcaatgatgaatctccatttttttgctgcagctcataggaaaaacac |
34369108 |
T |
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| Q |
107 |
caatggtttatctgaatagcatcgcaaagggttccgttgctaatattgctgctaagcttgagattatggagccttgctgtagtgtcaaagacaggtaaaa |
206 |
Q |
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| T |
34369107 |
caatggtttatctgaatagcatcgcaaagggttccgttgctaatattgctgctaagcttgagattatggagccttgttgtagtgtcaaagacaggtaaaa |
34369008 |
T |
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| Q |
207 |
aattcnnnnnnnnnnnnnnnnctttcaatttggttactctgcaacagggtatgtttactgtaagat |
272 |
Q |
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| T |
34369007 |
aattctttgtttttgttttttctttcaatttggttactctgcaacagggtatgtttactgtaagat |
34368942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 34353033 - 34352918
Alignment:
| Q |
88 |
cagctcataggaaaaacaccaatggtttatctgaatagcatcgcaaagggttccgttgctaatattgctgctaagcttgagattatggagccttgctgta |
187 |
Q |
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| T |
34353033 |
cagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaatattgctgctaagcttgagcttatggagccatgttgta |
34352934 |
T |
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| Q |
188 |
gtgtcaaagacaggta |
203 |
Q |
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| T |
34352933 |
gtgtcaaagacaggta |
34352918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 34358669 - 34358557
Alignment:
| Q |
91 |
ctcataggaaaaacaccaatggtttatctgaatagcatcgcaaagggttccgttgctaatattgctgctaagcttgagattatggagccttgctgtagtg |
190 |
Q |
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| T |
34358669 |
ctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaacattgctgcaaagcttgaggttatggagccttgttgtagtg |
34358570 |
T |
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| Q |
191 |
tcaaagacaggta |
203 |
Q |
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| T |
34358569 |
tcaaagacaggta |
34358557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 36275828 - 36275880
Alignment:
| Q |
151 |
attgctgctaagcttgagattatggagccttgctgtagtgtcaaagacaggta |
203 |
Q |
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| T |
36275828 |
attgctgcaaagctagaaatgatggaaccttgctctagtgtcaaagacaggta |
36275880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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