View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_163 (Length: 285)
Name: NF10104A_low_163
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_163 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 14559903 - 14560142
Alignment:
| Q |
6 |
acctctcttgtaatcacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14559903 |
acctctcttgtaatcacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagttgtgtggacc |
14560002 |
T |
|
| Q |
106 |
tccactgatacaaaactgtggtggtgaaggagggaaaagcttgtcacaacaaacatatgaaatacgttattatcatgaaaggagtttaattgattggaat |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14560003 |
tccactgacacaaaactgtggtggtgaaggagggaaaagcttgtcacaacaagcatatgaaacacgttattatcatgaaaggagtttaattgattgaaat |
14560102 |
T |
|
| Q |
206 |
ttcttaaatgttgaggtgggattcacttttggttttagag |
245 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14560103 |
ttcttaagtgttgaggtgggattcacttttggttttagag |
14560142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 14569658 - 14569885
Alignment:
| Q |
6 |
acctctcttgtaatcacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacc |
105 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| | |||||||||| ||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
14569658 |
acctctcttgtactcatttggtgggaaaaataccacctggaacacaaattcaatcatttcaagaagattcacttataggtaataaagagttgtgtggacc |
14569757 |
T |
|
| Q |
106 |
tccactgatacaaaactgtggtggtgaaggagggaaaagcttgtcacaacaaacatatgaaatacgttattatcatgaaaggagtttaattgattggaat |
205 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||||||||| ||||||| ||||||||| || ||||| ||| || ||| ||| |||||||| |||| |
|
|
| T |
14569758 |
tccactgacacaaaattgtgttggtgaaggagggaaaagcttgtaacaacaagcatatgaaacaccttattttcacgacaggggttcaattgattagaat |
14569857 |
T |
|
| Q |
206 |
ttcttaaatgttgaggtgggattcactt |
233 |
Q |
| |
|
||||||| ||||||| ||| |||||||| |
|
|
| T |
14569858 |
ttcttaagtgttgagttggaattcactt |
14569885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 32549283 - 32549371
Alignment:
| Q |
20 |
cacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacctcc |
108 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||| ||| |||||||||||| |||||||||||| |||||||||| ||| | ||||||||| |
|
|
| T |
32549283 |
cacttggtgggaagaataccaactgggacacagattcaatcatttcaagcagattcatttattggcaatgaagggctatttggacctcc |
32549371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 32549451 - 32549498
Alignment:
| Q |
194 |
attgattggaatttcttaaatgttgaggtgggattcacttttggtttt |
241 |
Q |
| |
|
||||||||||||||||| | || |||| |||||||||||||||||||| |
|
|
| T |
32549451 |
attgattggaatttcttgagtgctgagttgggattcacttttggtttt |
32549498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University