View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_164 (Length: 285)
Name: NF10104A_low_164
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_164 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 4775982 - 4775713
Alignment:
| Q |
1 |
tcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatc |
100 |
Q |
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| T |
4775982 |
tcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatc |
4775883 |
T |
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| Q |
101 |
gtactatagcagccactactcaagagttaatatgggttcaaaatttgttacaagaacttcaaattccattaactgcgccaacaatattctcagacaacat |
200 |
Q |
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| T |
4775882 |
gtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacat |
4775783 |
T |
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| Q |
201 |
tggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcat |
270 |
Q |
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| T |
4775782 |
tggagctacatatctatgtgcaaaccctgtctttcactctaggatgaagcatattgccatagattatcat |
4775713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 270
Target Start/End: Complemental strand, 43061341 - 43061074
Alignment:
| Q |
3 |
aacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgt |
102 |
Q |
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| T |
43061341 |
aacaggtgcttatttcatttattttggccctaatattatctcttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcgg |
43061242 |
T |
|
| Q |
103 |
actatagcagccactactcaagagttaatatgggttcaaaatttgttacaagaacttcaaattccattaactgcgccaacaatattctcagacaacattg |
202 |
Q |
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| T |
43061241 |
actatagcagccactactcaggaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacatta |
43061142 |
T |
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| Q |
203 |
gagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcat |
270 |
Q |
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| T |
43061141 |
gagctacatatctatgtgcaaaccctgtttttcactataggatgaaacacattgccatagattatcat |
43061074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 45192874 - 45192927
Alignment:
| Q |
196 |
aacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaa |
249 |
Q |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttcactctcggatgaaa |
45192927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 25450346 - 25450426
Alignment:
| Q |
190 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcat |
270 |
Q |
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| T |
25450346 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatcat |
25450426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 2607367 - 2607287
Alignment:
| Q |
190 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcat |
270 |
Q |
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||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| |||||||||||| |
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| T |
2607367 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatcat |
2607287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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