View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_17 (Length: 454)

Name: NF10104A_low_17
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_17
NF10104A_low_17
[»] chr1 (8 HSPs)
chr1 (309-450)||(25366913-25367054)
chr1 (178-305)||(25366752-25366879)
chr1 (184-265)||(28490556-28490636)
chr1 (185-306)||(31635465-31635586)
chr1 (178-266)||(11017998-11018086)
chr1 (184-251)||(29033009-29033076)
chr1 (178-265)||(1035585-1035672)
chr1 (182-265)||(3895928-3896011)
[»] chr2 (10 HSPs)
chr2 (178-308)||(14275772-14275902)
chr2 (178-308)||(32294524-32294654)
chr2 (178-306)||(20061071-20061199)
chr2 (184-265)||(44068839-44068920)
chr2 (178-310)||(39420205-39420337)
chr2 (183-265)||(30549081-30549163)
chr2 (184-266)||(39364445-39364527)
chr2 (184-252)||(25626319-25626387)
chr2 (178-306)||(25626490-25626618)
chr2 (217-281)||(30944241-30944305)
[»] chr7 (5 HSPs)
chr7 (178-266)||(32786807-32786895)
chr7 (182-306)||(26080989-26081113)
chr7 (182-306)||(26104776-26104900)
chr7 (178-253)||(28337221-28337296)
chr7 (185-308)||(31399302-31399423)
[»] chr5 (5 HSPs)
chr5 (183-287)||(10523677-10523781)
chr5 (178-304)||(967580-967707)
chr5 (178-265)||(41144638-41144725)
chr5 (178-224)||(14547840-14547886)
chr5 (184-266)||(43340302-43340384)
[»] chr3 (7 HSPs)
chr3 (184-300)||(47499394-47499510)
chr3 (185-303)||(37919182-37919299)
chr3 (185-310)||(19961158-19961282)
chr3 (187-287)||(33791505-33791605)
chr3 (184-252)||(53741346-53741414)
chr3 (182-265)||(4539877-4539960)
chr3 (187-310)||(54787811-54787934)
[»] chr8 (5 HSPs)
chr8 (179-269)||(8867200-8867290)
chr8 (178-224)||(31313324-31313370)
chr8 (178-265)||(39699623-39699710)
chr8 (209-265)||(17920221-17920277)
chr8 (182-226)||(41602426-41602470)
[»] chr6 (2 HSPs)
chr6 (208-305)||(1065635-1065732)
chr6 (184-265)||(30249167-30249248)
[»] chr4 (8 HSPs)
chr4 (178-265)||(27918393-27918480)
chr4 (208-298)||(29818480-29818570)
chr4 (178-266)||(14138992-14139080)
chr4 (178-265)||(564168-564255)
chr4 (179-306)||(28675701-28675828)
chr4 (182-253)||(54719691-54719762)
chr4 (178-287)||(20537338-20537447)
chr4 (182-251)||(30033589-30033658)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 309 - 450
Target Start/End: Original strand, 25366913 - 25367054
Alignment:
Q  309 aaatatgcaggatgccagtgccctaatgtgggaatttcatcatcattgaccgacaatagagggcacataccctttctcaattattgtgtcagaattcaga 408  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25366913 aaatatggaggatgacagtgccctaatgtgggaatttcatcatcattgaccgacaatagagggcacataccctttctcaattattgtgtcaggattcaga 25367012  T
Q  409 aagttgattcatgggccaaaccactttcaggattgtctcaca 450  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25367013 aagttgattcatgggccaaaccactttcaggattgtctcaca 25367054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 25366752 - 25366879
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatt 277  Q
    ||||| |||||||||||||| |||||| |||| ||| |||||||||| | ||  ||||||||| ||||||||||||||||||||||| | || |||||||    
T  25366752 caaggacacatgttaaggaactcaatatagaattatccgtatcaaaagtcgtgtaataaactttttaaaagttaaactattatgtttcccaatataaatt 25366851  T
Q  278 tattctttttaggttgcttaatatgtgc 305  Q
    || |||||||| ||| ||||| ||||||    
T  25366852 tactctttttaagtttcttaacatgtgc 25366879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 28490636 - 28490556
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    |||||||||||||||||| || |||||||||| |||| ||||| ||  ||| ||||||| |||||||||| |||||||||||    
T  28490636 cacatgttaaggaattcattatagaaatatacatatc-aaaatcgtgcaatcaacttctaaaaagttaaaatattatgtttt 28490556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 31635465 - 31635586
Alignment:
Q  185 acatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattctt 284  Q
    ||||||||||||||||| ||  ||||||||| ||| |||| | ||  | | |||||||||||||||||| ||||||||||||||     || || |||||    
T  31635465 acatgttaaggaattcattatggaaatatacatattaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttttctagtgctaaattgttctt 31635564  T
Q  285 tttaggttgcttaatatgtgcc 306  Q
    |||||||| ||||| |||||||    
T  31635565 tttaggttccttaacatgtgcc 31635586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 11018086 - 11017998
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttc 266  Q
    |||||||||||||||||||| | | || |||||||||||||| |||| | ||  | | |||||||||||||||||| ||| ||||||||    
T  11018086 caagggcacatgttaaggaacttattatagaaatatacgtattaaaagtcgtgcagtcaacttcttaaaagttaaattatcatgttttc 11017998  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 29033076 - 29033009
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagtta 251  Q
    |||||||||||||| ||| || ||||||||||||||||||| ||||  | | ||||||||||||||||    
T  29033076 cacatgttaaggaaatcagtatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagtta 29033009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 1035585 - 1035672
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    |||||||||||||||||||| ||| || |||||||||| |||||||| |  |  | | ||||| |||||||||||| |||||| ||||    
T  1035585 caagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaagttaaaatattatatttt 1035672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 3895928 - 3896011
Alignment:
Q  182 ggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    |||||||||||||| ||||| || | ||||||||||||||||| || |  ||| ||||||| |||| ||||| |||||| ||||    
T  3895928 ggcacatgttaaggtattcattataaaaatatacgtatcaaaagttatgtaatcaacttctaaaaacttaaaatattatatttt 3896011  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 14275772 - 14275902
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatt 277  Q
    ||||||||||| |||||||| ||| || ||||||||||||||||||| |  |  | | |||||||||||||||||  |||||||||||| ||   ||| |    
T  14275772 caagggcacatattaaggaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatattatgttttccaatgcaaaat 14275871  T
Q  278 tattctttttaggttgcttaatatgtgcctt 308  Q
    |  ||||||| ||||||||||||||||||||    
T  14275872 tgctctttttgggttgcttaatatgtgcctt 14275902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 308
Target Start/End: Complemental strand, 32294654 - 32294524
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatt 277  Q
    |||||||||||||||||||| ||| || ||||||||| |||| |||| | ||  | | ||||||| |||||| |||||||||||||||| ||  ||||||    
T  32294654 caagggcacatgttaaggaactcattatagaaatatatgtattaaaagtcgtgcattcaacttctgaaaagtcaaactattatgttttccaatgtaaatt 32294555  T
Q  278 tattctttttaggttgcttaatatgtgcctt 308  Q
    |  ||||||||||||  |||| |||||||||    
T  32294554 tgctctttttaggttctttaacatgtgcctt 32294524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 306
Target Start/End: Complemental strand, 20061199 - 20061071
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatt 277  Q
    |||||||||||| ||||||| ||| || ||||||||||||||||||| ||||  | | ||||||||||||||| |  |||||||||||  ||   ||| |    
T  20061199 caagggcacatgctaaggaactcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacatattatgtttttcaatgcaaagt 20061100  T
Q  278 tattctttttaggttgcttaatatgtgcc 306  Q
    |  |||||||||||||||||| |||||||    
T  20061099 tgctctttttaggttgcttaacatgtgcc 20061071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 44068920 - 44068839
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    |||||||||||||||||| || ||||||||| ||||||||| | ||  ||| |||||||||||||||||| ||| |||||||    
T  44068920 cacatgttaaggaattcattatagaaatatatgtatcaaaagtcgtgcaatcaacttcttaaaagttaaattatcatgtttt 44068839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 39420337 - 39420205
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatt 277  Q
    |||||||||||||||||||| ||| || |||||||||| ||| |||  | ||  | | |||||||| ||||||||| |||||||||||| ||   ||| |    
T  39420337 caagggcacatgttaaggaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatattatgttttccaatgcaaagt 39420238  T
Q  278 tattctttttaggttgcttaatatgtgccttaa 310  Q
    |  |||||||||||| ||||| |||||||||||    
T  39420237 tgctctttttaggttccttaacatgtgccttaa 39420205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 30549081 - 30549163
Alignment:
Q  183 gcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    ||||||||||||||| ||  || ||||||||||||||||||| | ||  ||| ||||||||||| |||||| ||| |||||||    
T  30549081 gcacatgttaaggaactctttatagaaatatacgtatcaaaagtcgtgcaatcaacttcttaaacgttaaattatcatgtttt 30549163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 39364445 - 39364527
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttc 266  Q
    |||||||||||||| | | || |||||||| | |||||||| | ||| | ||||||||| |||||||||| ||||||||||||    
T  39364445 cacatgttaaggaacttattatagaaatatgcatatcaaaagtcgtatagtaaacttctaaaaagttaaaatattatgttttc 39364527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 25626387 - 25626319
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaa 252  Q
    |||||||||||||| | | || ||||||||||||||||||| | ||| | | |||||||||||||||||    
T  25626387 cacatgttaaggaacttattatagaaatatacgtatcaaaagtcgtacattcaacttcttaaaagttaa 25626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 25626490 - 25626618
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatt 277  Q
    |||| ||||||||||| ||| | | ||  |||||||||||||||||| | ||  | | |||||||||||||||||| ||| |||||||| ||   ||| |    
T  25626490 caagagcacatgttaaagaacttattattgaaatatacgtatcaaaagtcgtgtagtcaacttcttaaaagttaaattatcatgttttccaattcaaagt 25626589  T
Q  278 tattctttttaggttgcttaatatgtgcc 306  Q
    | ||| ||||||||| ||||| |||||||    
T  25626590 tgttcattttaggttccttaacatgtgcc 25626618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 30944305 - 30944241
Alignment:
Q  217 tatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttatt 281  Q
    |||||||||| ||| | | ||||| ||||||||| || ||||||||||||||| ||||| |||||    
T  30944305 tatcaaaaatcgtacattcaactttttaaaagttgaaatattatgttttctaatataaagttatt 30944241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 32786807 - 32786895
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttc 266  Q
    |||||||||||||||||||| ||| || | ||||||||||||||||| | ||  | | |||||||||||||||||| ||||||||||||    
T  32786807 caagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttttc 32786895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 306
Target Start/End: Complemental strand, 26081113 - 26080989
Alignment:
Q  182 ggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttatt 281  Q
    ||||||| |||||||| ||| || |||||||||| ||| |||||||||    | |||||||||||||||||| |||||||||||  ||   ||| || ||    
T  26081113 ggcacatattaaggaactcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaaatattatgttttacaatgcaaaattgtt 26081014  T
Q  282 ctttttaggttgcttaatatgtgcc 306  Q
    |||||| |||| ||||| |||||||    
T  26081013 ctttttgggttccttaacatgtgcc 26080989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 306
Target Start/End: Complemental strand, 26104900 - 26104776
Alignment:
Q  182 ggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttatt 281  Q
    ||||||| |||||||| ||| || |||||||||| ||| |||||||||    | |||||||||||||||||| |||||||||||  ||   ||| || ||    
T  26104900 ggcacatattaaggaactcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaaatattatgttttacaatgcaaaattgtt 26104801  T
Q  282 ctttttaggttgcttaatatgtgcc 306  Q
    |||||| |||| ||||| |||||||    
T  26104800 ctttttgggttccttaacatgtgcc 26104776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 28337221 - 28337296
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaa 253  Q
    ||||||||||||||||| || ||| || ||||||||| |||| |||||| ||  ||| ||||||||||||||||||    
T  28337221 caagggcacatgttaagaaactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaa 28337296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 31399302 - 31399423
Alignment:
Q  185 acatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattctt 284  Q
    |||||||||| || ||| || | |||||||| ||| |||| ||||| | | ||||| |||||||||||||||| || |||| ||| ||||| || |  ||    
T  31399302 acatgttaagaaactcattataaaaatatacatattaaaagttgtatatttaactttttaaaagttaaactatcatattttttaatataaaattgt--tt 31399399  T
Q  285 tttaggttgcttaatatgtgcctt 308  Q
    ||| |||| ||||| |||||||||    
T  31399400 ttttggttccttaacatgtgcctt 31399423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 10523677 - 10523781
Alignment:
Q  183 gcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattc 282  Q
    ||||||||||||||| ||| || ||||||||||||||||||| | ||  | | || |||||||||||||||||||||||||| | || ||||| || |||    
T  10523677 gcacatgttaaggaactcattatagaaatatacgtatcaaaagtcgtgcattcaatttcttaaaagttaaactattatgtttaccaatataaaattgttc 10523776  T
Q  283 ttttt 287  Q
    |||||    
T  10523777 ttttt 10523781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 967580 - 967707
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaac-ttcttaaaagttaaactattatgttttctaacataaat 276  Q
    |||||||||||||||||||||||| || ||||||||| |||| |||| | ||  |   ||| || |||||||||||| ||||||| ||| ||| | |||     
T  967580 caagggcacatgttaaggaattcattatagaaatatatgtattaaaagtggtgcatccaacttttttaaaagttaaaatattatgatttttaatacaaaa 967679  T
Q  277 ttattctttttaggttgcttaatatgtg 304  Q
    |||||||||||||||| ||||| |||||    
T  967680 ttattctttttaggtttcttaagatgtg 967707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 41144725 - 41144638
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    |||||||||||||||||||| ||| || |||||||||| |||||||| | ||  | | ||||| |||||||||||||| |||| ||||    
T  41144725 caagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcgtgcattcaactttttaaaagttaaactgttatatttt 41144638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 14547840 - 14547886
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaa 224  Q
    |||||||||||||||||||||||  || ||||||||||| |||||||    
T  14547840 caagggcacatgttaaggaattccttatagaaatatacgcatcaaaa 14547886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 43340302 - 43340384
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttc 266  Q
    |||||||||||||| | | || ||||||||| | || |||| ||||| | | |||||||||||||||||  ||||||||||||    
T  43340302 cacatgttaaggaacttattaaagaaatataagcataaaaagttgtacattcaacttcttaaaagttaatatattatgttttc 43340384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 47499510 - 47499394
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattct 283  Q
    ||||||||||| |||||| || | |||||||||||| |||| |||| || | ||||| ||||||||| |  |||||| |||||||| ||||| || ||||    
T  47499510 cacatgttaagaaattcattataaaaatatacgtattaaaagttgtgaattcaactttttaaaagttcatatattatattttctaatataaaattgttct 47499411  T
Q  284 ttttaggttgcttaata 300  Q
    ||||| |||||||||||    
T  47499410 ttttatgttgcttaata 47499394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 37919182 - 37919299
Alignment:
Q  185 acatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattctt 284  Q
    |||||||||| || ||| || | ||||||||||||||||||||||  | | ||||||||||||||| |  |||||||||||| ||  |||| || ||| |    
T  37919182 acatgttaagaaactcattatataaatatacgtatcaaaaattgtgcattcaacttcttaaaagttgacatattatgttttccaatgtaaagttgttc-t 37919280  T
Q  285 tttaggttgcttaatatgt 303  Q
    |||| ||||||||| ||||    
T  37919281 tttatgttgcttaacatgt 37919299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 19961158 - 19961282
Alignment:
Q  185 acatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattctt 284  Q
    ||||||||||||| | | || ||||||||||||||||||| ||||  | | |||||| || |||||||| |||||||||||| || | ||| || ||| |    
T  19961158 acatgttaaggaactaattatagaaatatacgtatcaaaagttgtgtattcaacttc-tagaagttaaaatattatgttttccaatacaaaattgttcat 19961256  T
Q  285 tttaggttgcttaatatgtgccttaa 310  Q
    ||||| || ||||| ||||| |||||    
T  19961257 tttagattccttaacatgtgtcttaa 19961282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 33791505 - 33791605
Alignment:
Q  187 atgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattctttt 286  Q
    ||||||||||||||| |  | ||||||||||||||||  | ||| | | ||||| |||||||||||| |||||||||||| ||  |||| ||| ||||||    
T  33791505 atgttaaggaattcattgtaaaaatatacgtatcaaatgtcgtacattcaactttttaaaagttaaaatattatgttttccaatgtaaagttactctttt 33791604  T
Q  287 t 287  Q
    |    
T  33791605 t 33791605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 53741414 - 53741346
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaa 252  Q
    |||||||||| ||||||| || ||||||||||||||||||| |  || | | |||||||||||||||||    
T  53741414 cacatgttaaagaattcattatagaaatatacgtatcaaaagtcatacattcaacttcttaaaagttaa 53741346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 4539877 - 4539960
Alignment:
Q  182 ggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    ||||||||||||| || ||| || | ||||||| |||| |||||| ||  ||| |||||||||||||||||| ||| |||||||    
T  4539877 ggcacatgttaagaaactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaagttaaattatcatgtttt 4539960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 310
Target Start/End: Complemental strand, 54787934 - 54787811
Alignment:
Q  187 atgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattctttt 286  Q
    ||||||||||||||| || | |||||||| |||||||||| ||| | | ||| |||||||||||||| | |||| ||||  ||   ||| ||||  ||||    
T  54787934 atgttaaggaattcattataaaaatatacatatcaaaaatcgtacattcaacatcttaaaagttaaaatgttatatttttcaatgaaaagttatcttttt 54787835  T
Q  287 taggttgcttaatatgtgccttaa 310  Q
    |||||| ||||  |||||||||||    
T  54787834 taggttccttatcatgtgccttaa 54787811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 8867200 - 8867290
Alignment:
Q  179 aagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaa 269  Q
    ||||||||||||||| ||| ||| || ||||||||||| ||||||| ||||  | | |||||||||||| ||||| | |||||||||||||    
T  8867200 aagggcacatgttaaagaactcattatagaaatatacgcatcaaaagttgtgcattcaacttcttaaaaattaaaatgttatgttttctaa 8867290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 31313324 - 31313370
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaa 224  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||    
T  31313324 caagggcacatgttaaggaagtcattatagaaatatacgtatcaaaa 31313370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 39699710 - 39699623
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    ||||| ||||||||||||| || | || | ||||||||||||||||| | ||  | | ||||| |||||||||||| |||||||||||    
T  39699710 caaggacacatgttaaggagtttattataaaaatatacgtatcaaaagtcgtgcatttaactttttaaaagttaaagtattatgtttt 39699623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 17920277 - 17920221
Alignment:
Q  209 aatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    |||||||||||||||| | ||| | | ||||||||||||||| || |||||||||||    
T  17920277 aatatacgtatcaaaagtcgtacattcaacttcttaaaagttgaaatattatgtttt 17920221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 41602426 - 41602470
Alignment:
Q  182 ggcacatgttaaggaattcaatacagaaatatacgtatcaaaaat 226  Q
    |||||||||||||||||||| || ||||||||||| || ||||||    
T  41602426 ggcacatgttaaggaattcattatagaaatatacgcataaaaaat 41602470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 305
Target Start/End: Original strand, 1065635 - 1065732
Alignment:
Q  208 aaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattctttttaggttgcttaatatgtgc 305  Q
    ||||||| ||||||||| | ||| | | ||||| ||||||||||||||||||| ||||| || ||||| |||||||||||  ||| ||||| ||||||    
T  1065635 aaatatatgtatcaaaagtcgtacattcaacttattaaaagttaaactattatattttccaatataaaattattctttttgagttccttaacatgtgc 1065732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 30249167 - 30249248
Alignment:
Q  184 cacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    |||||||||||||| ||| || ||||||||| ||||||||| | ||  | | |||||||||||||||||| |||||||||||    
T  30249167 cacatgttaaggaactcattatagaaatataggtatcaaaattcgtgcagtcaacttcttaaaagttaaaatattatgtttt 30249248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 27918480 - 27918393
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    ||||| |||||||||||||| ||  || ||||||||| ||||||||| | ||  | |||||||||||||||||||| |||||| ||||    
T  27918480 caaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaatattatatttt 27918393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 29818570 - 29818480
Alignment:
Q  208 aaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatttattctttttaggttgcttaa 298  Q
    ||||||| |||||||||||| |  ||| |||||||||||||||||| ||| |||||||| ||   |||||||||| |||||| || |||||    
T  29818570 aaatatatgtatcaaaaattatccaatcaacttcttaaaagttaaattatcatgttttccaatgcaaatttattcattttagattccttaa 29818480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 14138992 - 14139080
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttc 266  Q
    |||||||||||||||| |||  |  || ||||||||||||||||||||| ||  | | || ||||||||||||||| |||||| |||||    
T  14138992 caagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaatattatattttc 14139080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 564255 - 564168
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgtttt 265  Q
    |||||| |||||||||||| || | || |||||||||||||| |||||||||  | |  ||||||||||| ||||| | |||||||||    
T  564255 caagggtacatgttaaggagtttattatagaaatatacgtattaaaaattgtgcatttgacttcttaaaaattaaaatgttatgtttt 564168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 306
Target Start/End: Complemental strand, 28675828 - 28675701
Alignment:
Q  179 aagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaattt 278  Q
    ||||||||||||||||||| ||| || |||||||||| |||||||| || |  | | ||||  ||||||||  |  |||||||||||||||   ||| ||    
T  28675828 aagggcacatgttaaggaagtcattatagaaatatacatatcaaaatttttgcattcaactgtttaaaagtcgatatattatgttttctaatgcaaaatt 28675729  T
Q  279 attctttttaggttgcttaatatgtgcc 306  Q
      |||| ||||||||||||| |||||||    
T  28675728 gctcttattaggttgcttaacatgtgcc 28675701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 54719762 - 54719691
Alignment:
Q  182 ggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaa 253  Q
    |||||||||||||||||| | || |||||||||| ||| |||| | ||| | | ||||||||||||||||||    
T  54719762 ggcacatgttaaggaatttattatagaaatatacttattaaaagtcgtatagtcaacttcttaaaagttaaa 54719691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 20537447 - 20537338
Alignment:
Q  178 caagggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagttaaactattatgttttctaacataaatt 277  Q
    |||||||| ||||||||||| ||| || | ||||||||| |  |||| ||||| | | ||||||||| || ||||| |||||||||||| || | ||| |    
T  20537447 caagggcatatgttaaggaactcattataaaaatatacgcactaaaagttgtatattcaacttcttagaaattaaaatattatgttttccaatacaaaat 20537348  T
Q  278 tattcttttt 287  Q
    |||| |||||    
T  20537347 tattattttt 20537338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 30033658 - 30033589
Alignment:
Q  182 ggcacatgttaaggaattcaatacagaaatatacgtatcaaaaattgtaaaataaacttcttaaaagtta 251  Q
    |||||||||||||||||| | || ||||||| ||||||||||| | ||| | |  |||||||||||||||    
T  30033658 ggcacatgttaaggaatttattatagaaataaacgtatcaaaagtcgtacatttgacttcttaaaagtta 30033589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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