View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_173 (Length: 277)
Name: NF10104A_low_173
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_173 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 6976695 - 6976585
Alignment:
| Q |
16 |
ggacatcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatat |
115 |
Q |
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| T |
6976695 |
ggacatcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatat |
6976596 |
T |
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| Q |
116 |
ccaacctacat |
126 |
Q |
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| T |
6976595 |
ccaacctacat |
6976585 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 6957183 - 6957129
Alignment:
| Q |
68 |
acctccttttcattgccataatattgagcacaatctatatgacgatatccaacct |
122 |
Q |
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| T |
6957183 |
acctccttttcattgccataaatttgagcacaatctatatgacgataaccaacct |
6957129 |
T |
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