View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_187 (Length: 270)
Name: NF10104A_low_187
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_187 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 24370429 - 24370687
Alignment:
| Q |
1 |
ggctggtacttatttgcaagagaaagaggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttt |
100 |
Q |
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| T |
24370429 |
ggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaaattcatgttt |
24370528 |
T |
|
| Q |
101 |
tctaaagtgacagagtttatgcatctgtttaggccattgttgtagcttaaaccaagttaaactttcctttccatcaaataggttgagtgaagtaataacc |
200 |
Q |
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| T |
24370529 |
actaaagtgacagagtttatgcatctgtttaggacattgttgtagcttaaaccaagttaaactttcctttccatcaaataggttgagtgaagtaataacc |
24370628 |
T |
|
| Q |
201 |
ttcacctttggttgtagatgaacttcattttgaaatattttgaaggaaatgtctatggt |
259 |
Q |
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| T |
24370629 |
ttcacctttggttgtagctgaacttcattttgaaatattttgaaggaaatgtctatggt |
24370687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 24364093 - 24363985
Alignment:
| Q |
22 |
gaaagaggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatg |
121 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24364093 |
gaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgtttactaaagtgacagagtttatg |
24363994 |
T |
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| Q |
122 |
catctgttt |
130 |
Q |
| |
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| T |
24363993 |
cgtctgttt |
24363985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 24362870 - 24362979
Alignment:
| Q |
4 |
tggtacttatttgcaagagaaagaggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttct |
103 |
Q |
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|||| ||| |||||||| ||||| |||||| |||| ||||||||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||||||| | |
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| T |
24362870 |
tggtccttgtttgcaagtgaaagtggactgcaatcgggagatgtttgtgtctttgaactgacaaacaagcaagatttagtttttaaaattcatgttttat |
24362969 |
T |
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| Q |
104 |
aaagtgacag |
113 |
Q |
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|||| ||||| |
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| T |
24362970 |
aaagggacag |
24362979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 24352660 - 24352746
Alignment:
| Q |
44 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgttt |
130 |
Q |
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| T |
24352660 |
atgtttgtgtctttgaactgataaacaaggaaaatttagtttttaaagttcatgttttctaaaggaacagagttgatgtatctgttt |
24352746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 24356025 - 24356127
Alignment:
| Q |
4 |
tggtacttatttgcaagagaaagaggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttct |
103 |
Q |
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|||| ||| |||||||||||||| |||||| || |||| ||||||||||||| ||| ||||||||||| ||| ||| |||||||||||||||||||||| |
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| T |
24356025 |
tggtccttgtttgcaagagaaagtggactgcaacaaggaaatgtttgtgtcttcgaactgataaacaaggaaggtttagtttttaaagttcatgttttct |
24356124 |
T |
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| Q |
104 |
aaa |
106 |
Q |
| |
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||| |
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| T |
24356125 |
aaa |
24356127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 24346918 - 24347003
Alignment:
| Q |
4 |
tggtacttatttgcaagagaaagaggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaa |
89 |
Q |
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| T |
24346918 |
tggtccttgtttgctagagaaagtggactgcaagcaggagatgtttgtgtctttgaactgataaacaagaaggatttggtttttaa |
24347003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 24359363 - 24359454
Alignment:
| Q |
13 |
tttgcaagagaaagaggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttcta |
104 |
Q |
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| T |
24359363 |
tttgcaagtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatattttcta |
24359454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 24314062 - 24314129
Alignment:
| Q |
46 |
gtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacag |
113 |
Q |
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| T |
24314062 |
gtttgtgtctttgaactgataaacaagaaggatttggtttttaatgttcatattaccaaaagtgacag |
24314129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 24363956 - 24363889
Alignment:
| Q |
190 |
aagtaataaccttcacctttggttgtagatgaacttcattttgaaatattttgaaggaaatgtctatg |
257 |
Q |
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| T |
24363956 |
aagtgataatcttcacatttggttgtagttgtatttaagtttgaaatattttgaaggaaatatctatg |
24363889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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