View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_188 (Length: 269)

Name: NF10104A_low_188
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_188
NF10104A_low_188
[»] chr4 (1 HSPs)
chr4 (13-269)||(37212923-37213179)
[»] chr2 (1 HSPs)
chr2 (39-205)||(1886251-1886417)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 37213179 - 37212923
Alignment:
Q  13 gatggacatcagcaaagaaagacattaacacattaaagtttgaacttgagagtgtgaaaacaaagtatctggagcttcaacatgatatggaaaatctgca 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37213179 gatggacaacagcaaagaaagacattaacacattaaagtttgaacttgagagtgtgaaaacaaagtatctggagcttcaacatgatatggaaaatctgca 37213080  T
Q  113 gaaaaatttcgataagctgctgaagcaaaagcatacatcagcttggactagtgggtggaagaaactgagcaaacttacaaaaatgacaaatgtggaaaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37213079 gaaaaatttcgataagctgctgaagcaaaagcatacatcagcttggactagtgggtggaagaaactgagcaaacttacaaaaatgacaaatgtggaaaat 37212980  T
Q  213 catgatatggttccaatttctgaagaaccaaacagaaagacaactagaaggtggaga 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37212979 catgatatggttccaatttctgaagaaccaaacagaaagacaactagaaggtggaga 37212923  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 1886251 - 1886417
Alignment:
Q  39 aacacattaaagtttgaacttgagagtgtgaaaacaaagtatctggagcttcaacatgatatggaaaatctgcagaaaaatttcgataagctgctgaagc 138  Q
    |||||| |||||||||| || |||||||||||| | |||||  | ||||||||| |||||||||||||| |||||||| | || |||||| || | ||||    
T  1886251 aacacactaaagtttgagctggagagtgtgaaagctaagtacttagagcttcaaaatgatatggaaaatttgcagaaacaatttgataagatgttaaagc 1886350  T
Q  139 aaaagcatacatcagcttggactagtgggtggaagaaactgagcaaacttacaaaaatgacaaatgt 205  Q
    | |||||||| |||||||||| |||||| |||||||||||||||||||||||||| || ||||||||    
T  1886351 agaagcatacttcagcttggagtagtggatggaagaaactgagcaaacttacaaagataacaaatgt 1886417  T

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