View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_19 (Length: 450)
Name: NF10104A_low_19
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 5 - 431
Target Start/End: Complemental strand, 41357557 - 41357123
Alignment:
| Q |
5 |
tgtcgaaaaatatgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttg |
104 |
Q |
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| T |
41357557 |
tgtcgacaaaaatgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttg |
41357458 |
T |
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| Q |
105 |
tgaaaatatctaaagatctctatagcatagcatgatgcttcatatgtcattcat--------catacgatgttaaataagcacatagctagaatgtaaac |
196 |
Q |
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| T |
41357457 |
tgaaaatatctaaagatctctatagcatagcatgatgcttcatatgtcattcattcattcatcatatgatgttaaataagcacatagctagaatgtaaac |
41357358 |
T |
|
| Q |
197 |
aattgaacaacgcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41357357 |
aattgaacaacgcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgt |
41357258 |
T |
|
| Q |
297 |
aatcagataaacaagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgcta |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41357257 |
aatcagataaacaagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgcta |
41357158 |
T |
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| Q |
397 |
taactccgctataccgctatttgacgccactttgt |
431 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
41357157 |
taactccgctataccgctatttgacgccactttgt |
41357123 |
T |
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