View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_193 (Length: 266)

Name: NF10104A_low_193
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_193
NF10104A_low_193
[»] chr7 (12 HSPs)
chr7 (25-208)||(31691181-31691352)
chr7 (126-158)||(22759064-22759096)
chr7 (126-158)||(27708934-27708966)
chr7 (128-163)||(25507241-25507276)
chr7 (82-121)||(42656459-42656498)
chr7 (126-156)||(28702639-28702669)
chr7 (82-115)||(2999141-2999174)
chr7 (84-121)||(28178913-28178950)
chr7 (82-136)||(12110292-12110343)
chr7 (126-154)||(31832193-31832221)
chr7 (82-114)||(39591554-39591586)
chr7 (126-154)||(39630264-39630292)
[»] chr2 (10 HSPs)
chr2 (83-124)||(33197327-33197368)
chr2 (126-162)||(6772695-6772731)
chr2 (82-121)||(17952788-17952827)
chr2 (82-121)||(31461382-31461421)
chr2 (82-121)||(32098395-32098434)
chr2 (82-129)||(40837515-40837562)
chr2 (128-162)||(6768583-6768617)
chr2 (127-156)||(10285758-10285787)
chr2 (82-114)||(29633023-29633055)
chr2 (82-114)||(33576681-33576713)
[»] chr8 (13 HSPs)
chr8 (126-162)||(31167861-31167897)
chr8 (82-158)||(12224986-12225059)
chr8 (82-156)||(26820112-26820182)
chr8 (82-121)||(14482146-14482185)
chr8 (82-121)||(31915356-31915395)
chr8 (82-121)||(39392748-39392787)
chr8 (80-114)||(29699205-29699239)
chr8 (128-157)||(12291784-12291813)
chr8 (125-162)||(35565183-35565220)
chr8 (82-114)||(8799356-8799388)
chr8 (82-114)||(11119086-11119118)
chr8 (82-114)||(40728505-40728537)
chr8 (80-120)||(44348432-44348472)
[»] chr1 (12 HSPs)
chr1 (126-162)||(6933117-6933153)
chr1 (82-115)||(39777613-39777646)
chr1 (82-157)||(14737792-14737872)
chr1 (126-158)||(32555703-32555735)
chr1 (126-157)||(48146173-48146204)
chr1 (82-124)||(46499941-46499983)
chr1 (83-121)||(50319236-50319274)
chr1 (125-158)||(4019748-4019781)
chr1 (82-114)||(15360845-15360877)
chr1 (82-114)||(36641826-36641858)
chr1 (126-158)||(41638453-41638485)
chr1 (82-114)||(49517021-49517053)
[»] chr5 (16 HSPs)
chr5 (82-115)||(10280663-10280696)
chr5 (126-158)||(30845201-30845233)
chr5 (82-121)||(7096214-7096253)
chr5 (126-157)||(14257346-14257377)
chr5 (82-121)||(37063161-37063200)
chr5 (41-114)||(912696-912768)
chr5 (82-115)||(10303751-10303784)
chr5 (82-115)||(14295456-14295489)
chr5 (82-115)||(28586853-28586886)
chr5 (126-159)||(35055091-35055124)
chr5 (126-159)||(35071833-35071866)
chr5 (82-115)||(35095870-35095903)
chr5 (126-155)||(36638644-36638673)
chr5 (82-114)||(29117017-29117049)
chr5 (83-115)||(29590828-29590860)
chr5 (82-114)||(35135749-35135781)
[»] chr3 (10 HSPs)
chr3 (126-159)||(4534499-4534532)
chr3 (82-157)||(20192693-20192765)
chr3 (82-122)||(49587003-49587043)
chr3 (82-121)||(1395615-1395654)
chr3 (126-157)||(20874458-20874489)
chr3 (83-121)||(905058-905096)
chr3 (126-155)||(8933670-8933699)
chr3 (82-114)||(26990685-26990717)
chr3 (126-158)||(53892009-53892041)
chr3 (82-114)||(54775079-54775111)
[»] scaffold0590 (1 HSPs)
scaffold0590 (82-121)||(1161-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (82-121)||(2775-2814)
[»] chr4 (13 HSPs)
chr4 (86-121)||(30338683-30338718)
chr4 (82-121)||(51044546-51044585)
chr4 (126-160)||(7730508-7730542)
chr4 (83-113)||(9319283-9319313)
chr4 (82-120)||(10192229-10192267)
chr4 (82-115)||(4071832-4071865)
chr4 (82-115)||(20936089-20936122)
chr4 (126-159)||(24068801-24068834)
chr4 (127-164)||(34621813-34621850)
chr4 (126-155)||(41162211-41162240)
chr4 (86-136)||(6364081-6364128)
chr4 (82-114)||(19422369-19422401)
chr4 (129-157)||(52645572-52645600)
[»] scaffold0286 (1 HSPs)
scaffold0286 (128-166)||(16026-16064)
[»] chr6 (8 HSPs)
chr6 (128-166)||(2161051-2161089)
chr6 (132-166)||(33284129-33284163)
chr6 (83-124)||(281936-281977)
chr6 (126-155)||(2023787-2023816)
chr6 (82-115)||(30865432-30865465)
chr6 (130-162)||(2732376-2732408)
chr6 (82-114)||(5328925-5328957)
chr6 (82-114)||(24836286-24836318)
[»] scaffold0024 (1 HSPs)
scaffold0024 (126-158)||(23806-23838)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 31691181 - 31691352
Alignment:
Q  25 ccacaagctttctagaatagattataaaaacaacttatagctcatgtggaatcgaattttgactttattctatcttttgttatagaaataggttatagat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||            ||||||||||||||||    
T  31691181 ccacaagctttctagaatagattataaaaacaacttatagctcatgtggaatcgaattttgactttgttcta------------gaaataggttatagat 31691268  T
Q  125 cataagtgcttaattaagttgtttatccaaacagagtcatctaatattgtatatgcattattattgaggcattcttttgttaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691269 cataagtgcttaattaagttgtttatccaaacagagtcatctaatattgtatatgcattattattgaggcattcttttgttaac 31691352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 22759096 - 22759064
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacag 158  Q
    |||||||||||||||||||||||||||||||||    
T  22759096 ataagtgcttaattaagttgtttatccaaacag 22759064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 27708934 - 27708966
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacag 158  Q
    |||||||||||||||||||||||||||||||||    
T  27708934 ataagtgcttaattaagttgtttatccaaacag 27708966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 25507276 - 25507241
Alignment:
Q  128 aagtgcttaattaagttgtttatccaaacagagtca 163  Q
    ||||||||||||||||||||||||||||||| ||||    
T  25507276 aagtgcttaattaagttgtttatccaaacagggtca 25507241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 42656498 - 42656459
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  42656498 tttgactttattttatcttttgttatagaaatagcttata 42656459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 28702669 - 28702639
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  28702669 ataagtgcttaattaagttgtttatccaaac 28702639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 2999174 - 2999141
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  2999174 tttgactttattttatcttttgttatagaaatag 2999141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 28178950 - 28178913
Alignment:
Q  84 tgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  28178950 tgactttattttatcttttgttatagaaatagcttata 28178913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 12110343 - 12110292
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataagtgctta 136  Q
    |||||||||||| |||||| ||| |||||||||||||||   |||||||||||||    
T  12110343 tttgactttattttatcttgtgtaatagaaataggttat---tcataagtgctta 12110292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 31832221 - 31832193
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaa 154  Q
    |||||||||||||||||||||||||||||    
T  31832221 ataagtgcttaattaagttgtttatccaa 31832193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 39591554 - 39591586
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  39591554 tttgactttattttatcttttgttatagaaata 39591586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 39630292 - 39630264
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaa 154  Q
    |||||||||||||||||||||||||||||    
T  39630292 ataagtgcttaattaagttgtttatccaa 39630264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 33197327 - 33197368
Alignment:
Q  83 ttgactttattctatcttttgttatagaaataggttatagat 124  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagat 33197368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 6772695 - 6772731
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacagagtc 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  6772695 ataagtgcttaattaagttgtttatccaaacagagtc 6772731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 17952788 - 17952827
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  17952788 tttgactttattttatcttttgttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 31461421 - 31461382
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  31461421 tttgactttattttatcttttgttatagaaatagcttata 31461382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 32098395 - 32098434
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  32098395 tttgactttattttatcttttgttatagaaatagcttata 32098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 40837515 - 40837562
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataa 129  Q
    |||||||||| | ||||||||||||||||||||| ||||| |||||||    
T  40837515 tttgactttaatttatcttttgttatagaaatagcttatacatcataa 40837562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 6768583 - 6768617
Alignment:
Q  128 aagtgcttaattaagttgtttatccaaacagagtc 162  Q
    ||||||||||||||||||||| |||||||||||||    
T  6768583 aagtgcttaattaagttgtttgtccaaacagagtc 6768617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 10285787 - 10285758
Alignment:
Q  127 taagtgcttaattaagttgtttatccaaac 156  Q
    ||||||||||||||||||||||||||||||    
T  10285787 taagtgcttaattaagttgtttatccaaac 10285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 29633055 - 29633023
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||||||| ||||||||||||||||    
T  29633055 tttgactttattctattttttgttatagaaata 29633023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 33576681 - 33576713
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  33576681 tttgactttattgtatcttttgttatagaaata 33576713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 31167897 - 31167861
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacagagtc 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  31167897 ataagtgcttaattaagttgtttatccaaacagagtc 31167861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 12224986 - 12225059
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaacag 158  Q
    |||||||||||| ||||||||||  ||||||||  |||||   ||||||  ||||||||||||||||||||||||||    
T  12224986 tttgactttattttatcttttgtcttagaaataacttata---cataagctcttaattaagttgtttatccaaacag 12225059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 26820182 - 26820112
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||| ||||||||||||||||||||  |||||     |||| |||||||| ||||||||||||||||    
T  26820182 tttgactttattttatcttttgttatagaaataacttata----ctaagcgcttaattgagttgtttatccaaac 26820112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 14482185 - 14482146
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  14482185 tttgactttattttatcttttgttatagaaatagtttata 14482146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 31915356 - 31915395
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  31915356 tttgactttattctatcttttgttatagatatagcttata 31915395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 39392748 - 39392787
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  39392748 tttgactttattttatcttttgttatagaaatagtttata 39392787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 29699239 - 29699205
Alignment:
Q  80 attttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||||| ||||||||||||||||||||    
T  29699239 attttgactttattttatcttttgttatagaaata 29699205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 12291784 - 12291813
Alignment:
Q  128 aagtgcttaattaagttgtttatccaaaca 157  Q
    ||||||||||||||||||||||||||||||    
T  12291784 aagtgcttaattaagttgtttatccaaaca 12291813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 35565220 - 35565183
Alignment:
Q  125 cataagtgcttaattaagttgtttatccaaacagagtc 162  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  35565220 cataagtacttaatgaagttgtttatccaaacagagtc 35565183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 8799388 - 8799356
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  8799388 tttgactttattttatcttttgttatagaaata 8799356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 11119086 - 11119118
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  11119086 tttgactttattttatcttttgttatagaaata 11119118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 40728505 - 40728537
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  40728505 tttgactttattttatcttttgttatagaaata 40728537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 44348472 - 44348432
Alignment:
Q  80 attttgactttattctatcttttgttatagaaataggttat 120  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  44348472 attttgactttattacatcttttgttatagaaatagcttat 44348432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 6933117 - 6933153
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacagagtc 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  6933117 ataagtgcttaattaagttgtttatccaaacagagtc 6933153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 39777646 - 39777613
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    ||||||||||||||||||||||||||||||||||    
T  39777646 tttgactttattctatcttttgttatagaaatag 39777613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 14737792 - 14737872
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggtt-----atagatcataagtgcttaattaagttgtttatccaaaca 157  Q
    |||||||||||| ||||||||||||||||||||  ||     ||| || ||||||||||||||||| || |||||||||||    
T  14737792 tttgactttattttatcttttgttatagaaataacttagcacatatatgataagtgcttaattaagctgcttatccaaaca 14737872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 32555735 - 32555703
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacag 158  Q
    |||||||||||||||||||||||||||||||||    
T  32555735 ataagtgcttaattaagttgtttatccaaacag 32555703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 157
Target Start/End: Original strand, 48146173 - 48146204
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaaca 157  Q
    ||||||||||||||||||||||||||||||||    
T  48146173 ataagtgcttaattaagttgtttatccaaaca 48146204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 46499941 - 46499983
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagat 124  Q
    |||||||||||| |||||||| |||||||||||| ||||||||    
T  46499941 tttgactttattttatcttttcttatagaaatagcttatagat 46499983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 50319274 - 50319236
Alignment:
Q  83 ttgactttattctatcttttgttatagaaataggttata 121  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  50319274 ttgactttattttatcttttgttatagaaatagcttata 50319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 4019748 - 4019781
Alignment:
Q  125 cataagtgcttaattaagttgtttatccaaacag 158  Q
    |||||||||| |||||||||||||||||||||||    
T  4019748 cataagtgctaaattaagttgtttatccaaacag 4019781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 15360877 - 15360845
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  15360877 tttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 36641858 - 36641826
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  36641858 tttgactttattttatcttttgttatagaaata 36641826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 41638453 - 41638485
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacag 158  Q
    ||||||||||||| |||||||||||||||||||    
T  41638453 ataagtgcttaatcaagttgtttatccaaacag 41638485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 49517053 - 49517021
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  49517053 tttgactttattttatcttttgttatagaaata 49517021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 10280663 - 10280696
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    ||||||||||||||||||||||||||||||||||    
T  10280663 tttgactttattctatcttttgttatagaaatag 10280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 30845233 - 30845201
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacag 158  Q
    |||||||||||||||||||||||||||||||||    
T  30845233 ataagtgcttaattaagttgtttatccaaacag 30845201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 7096214 - 7096253
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  7096214 tttgactttattttatcttttgttatagaaatagcttata 7096253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 157
Target Start/End: Complemental strand, 14257377 - 14257346
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaaca 157  Q
    ||||||||||||||||||||||||||||||||    
T  14257377 ataagtgcttaattaagttgtttatccaaaca 14257346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 37063161 - 37063200
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  37063161 tttgactttattttatcttttgttatagaaatagtttata 37063200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 912696 - 912768
Alignment:
Q  41 atagattataaaaacaacttatagctcatgtggaatcgaattttgactttattctatcttttgttatagaaata 114  Q
    |||| ||||||||||||||||| ||| || || || | ||||||||||||||| ||| || |||||||||||||    
T  912696 atagtttataaaaacaacttattgcttatatgaaaac-aattttgactttattttatattgtgttatagaaata 912768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 10303784 - 10303751
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  10303784 tttgactttattttatcttttgttatagaaatag 10303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 14295489 - 14295456
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  14295489 tttgactttattttatcttttgttatagaaatag 14295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 28586853 - 28586886
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  28586853 tttgactttattttatcttttgttatagaaatag 28586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 35055124 - 35055091
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacaga 159  Q
    |||||||||||||||||||||||| |||||||||    
T  35055124 ataagtgcttaattaagttgtttacccaaacaga 35055091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 35071866 - 35071833
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacaga 159  Q
    |||||||||||||||||||||||| |||||||||    
T  35071866 ataagtgcttaattaagttgtttacccaaacaga 35071833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 35095870 - 35095903
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  35095870 tttgactttattttatcttttgttatagaaatag 35095903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 36638673 - 36638644
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  36638673 ataagtgcttaattaagttgtttatccaaa 36638644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 29117017 - 29117049
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  29117017 tttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 29590828 - 29590860
Alignment:
Q  83 ttgactttattctatcttttgttatagaaatag 115  Q
    ||||||||||| |||||||||||||||||||||    
T  29590828 ttgactttattttatcttttgttatagaaatag 29590860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 35135749 - 35135781
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  35135749 tttgactttattttatcttttgttatagaaata 35135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 4534499 - 4534532
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacaga 159  Q
    ||||||||||||||||||||||||||||||||||    
T  4534499 ataagtgcttaattaagttgtttatccaaacaga 4534532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 20192693 - 20192765
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaaca 157  Q
    |||||||||||| |||||||||||||| |||||| |||||   ||||||  ||||||| || ||||||||||||||    
T  20192693 tttgactttattttatcttttgttatataaatagcttata---cataagcacttaattgagctgtttatccaaaca 20192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 49587003 - 49587043
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatag 122  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  49587003 tttgactttattttatcttttgttatagaaatagcttatag 49587043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 1395654 - 1395615
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  1395654 tttgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 157
Target Start/End: Original strand, 20874458 - 20874489
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaaca 157  Q
    ||||||||||||||||||||||||||||||||    
T  20874458 ataagtgcttaattaagttgtttatccaaaca 20874489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 905058 - 905096
Alignment:
Q  83 ttgactttattctatcttttgttatagaaataggttata 121  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  905058 ttgactttattttatcttttgttatagaaatagcttata 905096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 8933699 - 8933670
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  8933699 ataagtgcttaattaagttgtttatccaaa 8933670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 26990717 - 26990685
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  26990717 tttgactttattttatcttttgttatagaaata 26990685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 53892009 - 53892041
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacag 158  Q
    ||||||||||||||||| |||||||||||||||    
T  53892009 ataagtgcttaattaagctgtttatccaaacag 53892041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 54775111 - 54775079
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  54775111 tttgactttattttatcttttgttatagaaata 54775079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 1161 - 1200
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttata 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 2814 - 2775
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttata 2775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 30338683 - 30338718
Alignment:
Q  86 actttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||||||||||||||||||||| |||||    
T  30338683 actttattctatcttttgttatagaaatagtttata 30338718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 51044546 - 51044585
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  51044546 tttgactttattttatcttttgttatagaaatagcttata 51044585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 7730542 - 7730508
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacagag 160  Q
    |||||||||||||||||||||||||||||| ||||    
T  7730542 ataagtgcttaattaagttgtttatccaaatagag 7730508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 9319283 - 9319313
Alignment:
Q  83 ttgactttattctatcttttgttatagaaat 113  Q
    |||||||||||||||||||||||||||||||    
T  9319283 ttgactttattctatcttttgttatagaaat 9319313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 10192267 - 10192229
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttat 120  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  10192267 tttgactttattctatcttttgttataaaaatagtttat 10192229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 4071865 - 4071832
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  4071865 tttgactttattttatcttttgttatagaaatag 4071832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 20936089 - 20936122
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  20936089 tttgactttattttatcttttgttatagaaatag 20936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 24068801 - 24068834
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacaga 159  Q
    |||||||||||||||||||| |||||||||||||    
T  24068801 ataagtgcttaattaagttgattatccaaacaga 24068834  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 34621850 - 34621813
Alignment:
Q  127 taagtgcttaattaagttgtttatccaaacagagtcat 164  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  34621850 taagtgtttagttaagttgtttatccaaacagagtcat 34621813  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 41162211 - 41162240
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  41162211 ataagtgcttaattaagttgtttatccaaa 41162240  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 6364128 - 6364081
Alignment:
Q  86 actttattctatcttttgttatagaaataggttatagatcataagtgctta 136  Q
    |||||||| ||||||||||||||||||||| |||||   ||||||||||||    
T  6364128 actttattttatcttttgttatagaaatagcttata---cataagtgctta 6364081  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 19422401 - 19422369
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  19422401 tttgactttattatatcttttgttatagaaata 19422369  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 52645600 - 52645572
Alignment:
Q  129 agtgcttaattaagttgtttatccaaaca 157  Q
    |||||||||||||||||||||||||||||    
T  52645600 agtgcttaattaagttgtttatccaaaca 52645572  T

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Target: scaffold0286 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 16064 - 16026
Alignment:
Q  128 aagtgcttaattaagttgtttatccaaacagagtcatct 166  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  16064 aagtgctgaattaagttgtttatccaaacacagtcatct 16026  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 2161051 - 2161089
Alignment:
Q  128 aagtgcttaattaagttgtttatccaaacagagtcatct 166  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  2161051 aagtgctgaattaagttgtttatccaaacacagtcatct 2161089  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 33284163 - 33284129
Alignment:
Q  132 gcttaattaagttgtttatccaaacagagtcatct 166  Q
    |||||||||||||||||||||||||||| ||||||    
T  33284163 gcttaattaagttgtttatccaaacagaatcatct 33284129  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 281936 - 281977
Alignment:
Q  83 ttgactttattctatcttttgttatagaaataggttatagat 124  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||    
T  281936 ttgactttattttatcttttgttataggaatagcttatagat 281977  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 2023787 - 2023816
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  2023787 ataagtgcttaattaagttgtttatccaaa 2023816  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 30865465 - 30865432
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  30865465 tttgactttattttatcttttgttatagaaatag 30865432  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 2732376 - 2732408
Alignment:
Q  130 gtgcttaattaagttgtttatccaaacagagtc 162  Q
    ||||||||||||||||||||| |||||||||||    
T  2732376 gtgcttaattaagttgtttattcaaacagagtc 2732408  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 5328957 - 5328925
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  5328957 tttgactttattttatcttttgttatagaaata 5328925  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 24836286 - 24836318
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  24836286 tttgactttattttatcttttgttatagaaata 24836318  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 23838 - 23806
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaacag 158  Q
    ||||||| |||||||||||||||||||||||||    
T  23838 ataagtgtttaattaagttgtttatccaaacag 23806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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