View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_195 (Length: 265)
Name: NF10104A_low_195
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_195 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 14865132 - 14865386
Alignment:
| Q |
5 |
agtagcacagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggattt |
104 |
Q |
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| T |
14865132 |
agtagcccagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggattt |
14865231 |
T |
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| Q |
105 |
gactcgttcaaaaactactccgacggtgaaaacgttctggtgaacgattttcgtcgctacagccgaaactccgccggccataaagaaaccttcaccagct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14865232 |
gactcgttcaaaaactactccgacggtgaaaacgttctggtgaacgatttccgtcgctacagccgaaactccgccggccataaagaaaccttcaccagct |
14865331 |
T |
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| Q |
205 |
acgctacaaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
259 |
Q |
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| T |
14865332 |
acgctaccaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
14865386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 55977451 - 55977713
Alignment:
| Q |
5 |
agtagcacagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggattt |
104 |
Q |
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|||||| |||||||| |||||||||| || ||||| ||||||| |||||| || ||||| |||||||||||||||||| || |||||||||| |
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| T |
55977451 |
agtagcccagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacgagtctacccggtggacac |
55977550 |
T |
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| Q |
105 |
gactcgttcaaaaactactccgacggtgaaaacgttctg--------gtgaacgattttcgtcgctacagccgaaactccgccggccataaagaaacctt |
196 |
Q |
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| T |
55977551 |
gactcgttcaaaaactactcggacggagactac--tctgacggagaggtgaatgatttctgtcgctacagccgaaactctgccggccataaagaaacttt |
55977648 |
T |
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| Q |
197 |
caccagct--acgctacaaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
259 |
Q |
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||||| || |||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
55977649 |
caccaactacacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagc |
55977713 |
T |
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