View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_196 (Length: 263)
Name: NF10104A_low_196
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_196 |
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| [»] scaffold0416 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 19297834 - 19297584
Alignment:
| Q |
7 |
aattcaacactctactatctagggttttctgatcccctctttgttcttccccaattcacgctcttctttgcaaattatcatacttcgtacttgtacgcat |
106 |
Q |
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| T |
19297834 |
aattcaacactctactatctagggttttctgatcccctctttgttcttccccaattcacgctcttcttcgcaaattatcatacttcgtacttgtacgcat |
19297735 |
T |
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| Q |
107 |
tacgtgttcccattgcttacttttttagtttatggaaattttgaactcaatttcgtttttaatcgaataggaaaactttaattttttctgaaaattatct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19297734 |
tacgtgttcccattgcttacttttttagtttatggaaattttgaactcaatttcgtttttaatcgaataggaaaactttaattttttctgaaaattatct |
19297635 |
T |
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| Q |
207 |
attactcatcactgttattgtgttttgcatttgggtttatatattcttcga |
257 |
Q |
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| T |
19297634 |
attactcatcactgttattgtgttttgcatttgggtttatatgtttttcga |
19297584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 27691980 - 27691851
Alignment:
| Q |
127 |
ttttttagtttatggaaattttgaactcaatttcgtttttaatcgaataggaaaactttaattttttctgaaaattatctattactcatcactgttattg |
226 |
Q |
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| T |
27691980 |
ttttttaattgatagaaattttgaactcaatttcgttttaaattgaataggaacactt-aattttttatgaaaattgtcttttattcatcactgttattt |
27691882 |
T |
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| Q |
227 |
tgttttgcatttgggtttatatattcttcga |
257 |
Q |
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| T |
27691881 |
tgttttgcatttgggtttatatgtttttcga |
27691851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 6726 - 6855
Alignment:
| Q |
127 |
ttttttagtttatggaaattttgaactcaatttcgtttttaatcgaataggaaaactttaattttttctgaaaattatctattactcatcactgttattg |
226 |
Q |
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|||||||||| || ||||||||||||||||||||||||| ||| ||||||||| || |||||||||| |||||||||||| | | |||||||| ||||| |
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| T |
6726 |
ttttttagttgatagaaattttgaactcaatttcgttttaaattgaataggaacac-ttaattttttatgaaaattatctttaattcatcactattattt |
6824 |
T |
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| Q |
227 |
tgttttgcatttgggtttatatattcttcga |
257 |
Q |
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| T |
6825 |
tgttttgcatttgagtttatatgtttttcga |
6855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 9919325 - 9919454
Alignment:
| Q |
127 |
ttttttagtttatggaaattttgaactcaatttcgtttttaatcgaataggaaaactttaattttttctgaaaattatctattactcatcactgttattg |
226 |
Q |
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| T |
9919325 |
ttttttagttgatagaaattttgaactcaatttcgttttaaattgaataggaacac-ttaattttttatgaaaattgtcttttattcatcactattattt |
9919423 |
T |
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| Q |
227 |
tgttttgcatttgggtttatatattcttcga |
257 |
Q |
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| T |
9919424 |
tgttttgcaattgggtttatatgtttttcga |
9919454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 14620863 - 14621000
Alignment:
| Q |
127 |
ttttttagtttatggaaattttgaactcaatttcgtttttaatcgaataggaaaact-------ttaattttttctgaaaattatctattactcatcact |
219 |
Q |
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| T |
14620863 |
ttttttagttgatagaaattttgaactcaattttgttttaaattgaataggaacactaatttttttttttttttatgaaaattgtcttttattcatcact |
14620962 |
T |
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| Q |
220 |
gttattgtgttttgcatttgggtttatatattcttcga |
257 |
Q |
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| T |
14620963 |
attattttgttttgcatttgggtttatatgtttttcga |
14621000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 42509867 - 42509742
Alignment:
| Q |
127 |
ttttttagtttatggaaattttgaactcaatttcgtttttaatcgaataggaaaactttaattttttctgaaaattatctattactcatcactgttattg |
226 |
Q |
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|||||||||| || ||||||| |||||||||||||||| || ||||||| |||| |||||||| |||||||| ||| ||| |||||||| ||||| |
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| T |
42509867 |
ttttttagttgataaaaattttaaactcaatttcgttttaaa----ataggaacactt-aattttttatgaaaattgtcttttattcatcactattattt |
42509773 |
T |
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| Q |
227 |
tgttttgcatttgggtttatatattcttcga |
257 |
Q |
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| T |
42509772 |
tgttttgcatttaggtttatatgtttttcga |
42509742 |
T |
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