View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_20 (Length: 449)
Name: NF10104A_low_20
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 182 - 437
Target Start/End: Original strand, 3325435 - 3325689
Alignment:
| Q |
182 |
gatgcactatcattattttatgtattttaccaaagttgatttgaaatcaatgtactccctttgtcccaaattatttaagaaaaaactcatttatttgttc |
281 |
Q |
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| T |
3325435 |
gatgcactgtcattattatatgtattttaccaaagttgatttgaaatcaatgtactccctttgtcccaaattatttaagaaaaaactcatttatttgttc |
3325534 |
T |
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| Q |
282 |
taaattttaacaggnnnnnnnnnnccaacatttatgaaatgaaatgctaatgtctatttgatatctatttttcctttaaatttttaaattcgatatagcc |
381 |
Q |
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| T |
3325535 |
taaattttaacagg--aaaaaaaaccaacatttatgaaatgaaattctaatgtctatttgatatctatttttcctttaaatttttaaattcgatatagcc |
3325632 |
T |
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| Q |
382 |
gtacatatg-nnnnnnnnnnnngagggaatcgtgcatatgtttgatgaagttatttt |
437 |
Q |
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| T |
3325633 |
gtgcatatgtttttttttttttgagggaatcgtgcatatgtttgatgaagttatttt |
3325689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 3325330 - 3325434
Alignment:
| Q |
21 |
caatgacaatatgttgagtctatgggaatgggtgcaagcaattatgcaaatcgt-cgaaaaaatatgtagtctttaaggtaaccttgataatatatgcat |
119 |
Q |
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| T |
3325330 |
caatggcaatatgtggagtctatgggaatgggtgcaagcaattatgcaaatcgtccaaaaaaatatgtagtctttaaggtaaccttgataatatacgcat |
3325429 |
T |
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| Q |
120 |
tcatt |
124 |
Q |
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| T |
3325430 |
tcatt |
3325434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 34 - 379
Target Start/End: Complemental strand, 25141695 - 25141348
Alignment:
| Q |
34 |
ttgagtctatgggaatgggtgcaagcaatta-tgcaaatcgtcgaaaaaatatgtagtctttaaggtaaccttgataatatatgcattcattaatgtaac |
132 |
Q |
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| T |
25141695 |
ttgagtcta-gggaacaggtgcatgcaattaatggaaatcgtggaaaaaatatgtagtatttaaggtaactatgataatatacgcatacattaatgtaat |
25141597 |
T |
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| Q |
133 |
tgcattggtaaatgagaaactacataca-----agagagaagattagttttatcgatgcactatcattattttatgtattttaccaaagttgatttgaaa |
227 |
Q |
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| T |
25141596 |
tgcattggtaaataa-aaactacatactgtattatatagaagattagttttatcgatgcactgtcattattatatgtattttatgaaagttgatttgaaa |
25141498 |
T |
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| Q |
228 |
tcaatgtactccctttgtcccaaattatttaagaaaaaactca-tttatttgttctaaattttaacaggnnnnnnnnnnccaacatttatgaaatgaaat |
326 |
Q |
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| T |
25141497 |
taaatgtaattcatccgtcccaaattatttatgaaaaaactcattttatttgttccaagttttaagag---agaaaaaaccagcatttatgaaattaaat |
25141401 |
T |
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| Q |
327 |
gctaatgtctatttgatatctatttttcctttaaatttttaaattcgatatag |
379 |
Q |
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||||| || |||||||||||| ||||||||| |||| |||||||| |||||| |
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| T |
25141400 |
gctaaagttgatttgatatctacttttcctttcaattattaaattccatatag |
25141348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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